Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.95■□□□□ 0.94
HDAC3O15379 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.95■□□□□ 0.94
HDAC3O15379 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC3O15379 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.95■□□□□ 0.94
HDAC3O15379 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC3O15379 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC3O15379 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
HDAC3O15379 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
HDAC3O15379 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC3O15379 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC3O15379 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HDAC3O15379 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.94■□□□□ 0.94
HDAC3O15379 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC3O15379 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC3O15379 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC3O15379 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC3O15379 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC3O15379 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.94■□□□□ 0.94
HDAC3O15379 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC3O15379 AC079089.2-201ENST00000531211 1277 ntBASIC20.94■□□□□ 0.94
HDAC3O15379 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.94■□□□□ 0.94
HDAC3O15379 MTDHP2-201ENST00000601468 714 ntBASIC20.94■□□□□ 0.94
HDAC3O15379 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC3O15379 AL031602.1-201ENST00000633169 911 ntBASIC20.94■□□□□ 0.94
HDAC3O15379 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC3O15379 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC3O15379 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC3O15379 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
HDAC3O15379 AC026471.6-201ENST00000622954 1905 ntBASIC20.94■□□□□ 0.94
HDAC3O15379 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.93■□□□□ 0.94
HDAC3O15379 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC3O15379 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC3O15379 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC3O15379 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.93■□□□□ 0.94
HDAC3O15379 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC3O15379 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC3O15379 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.93■□□□□ 0.94
HDAC3O15379 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC3O15379 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC3O15379 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC3O15379 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.93■□□□□ 0.94
HDAC3O15379 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC3O15379 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC3O15379 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC3O15379 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC3O15379 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HDAC3O15379 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
HDAC3O15379 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC3O15379 AC104564.3-201ENST00000582367 638 ntBASIC20.92■□□□□ 0.94
HDAC3O15379 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
HDAC3O15379 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC3O15379 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC3O15379 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC3O15379 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
HDAC3O15379 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDAC3O15379 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
HDAC3O15379 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
HDAC3O15379 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC3O15379 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC3O15379 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC3O15379 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDAC3O15379 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.91■□□□□ 0.94
HDAC3O15379 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.91■□□□□ 0.94
HDAC3O15379 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.91■□□□□ 0.94
HDAC3O15379 KRT125P-201ENST00000546827 989 ntBASIC20.91■□□□□ 0.94
HDAC3O15379 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.91■□□□□ 0.94
HDAC3O15379 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.9■□□□□ 0.94
HDAC3O15379 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.9■□□□□ 0.94
HDAC3O15379 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.9■□□□□ 0.94
HDAC3O15379 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HDAC3O15379 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.9■□□□□ 0.94
HDAC3O15379 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.9■□□□□ 0.94
HDAC3O15379 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
HDAC3O15379 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC3O15379 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.9■□□□□ 0.94
HDAC3O15379 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HDAC3O15379 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.9■□□□□ 0.94
HDAC3O15379 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC3O15379 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC3O15379 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
HDAC3O15379 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC3O15379 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDAC3O15379 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.9■□□□□ 0.94
HDAC3O15379 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HDAC3O15379 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.89■□□□□ 0.94
HDAC3O15379 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HDAC3O15379 Z92544.1-202ENST00000571933 1220 ntBASIC20.89■□□□□ 0.93
HDAC3O15379 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.89■□□□□ 0.93
HDAC3O15379 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.89■□□□□ 0.93
HDAC3O15379 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC3O15379 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC3O15379 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC3O15379 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC3O15379 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC3O15379 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HDAC3O15379 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.88■□□□□ 0.93
HDAC3O15379 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC3O15379 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
HDAC3O15379 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC3O15379 OR7E47P-201ENST00000546390 1422 ntBASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms