Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.73■□□□□ 0.91
SLC28A1O00337 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC28A1O00337 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC28A1O00337 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC28A1O00337 AC010141.3-201ENST00000456659 717 ntBASIC20.73■□□□□ 0.91
SLC28A1O00337 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
SLC28A1O00337 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SLC28A1O00337 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC28A1O00337 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.73■□□□□ 0.91
SLC28A1O00337 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SLC28A1O00337 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SLC28A1O00337 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SLC28A1O00337 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SLC28A1O00337 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.72■□□□□ 0.91
SLC28A1O00337 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SLC28A1O00337 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.72■□□□□ 0.91
SLC28A1O00337 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.72■□□□□ 0.91
SLC28A1O00337 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SLC28A1O00337 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SLC28A1O00337 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SLC28A1O00337 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.72■□□□□ 0.91
SLC28A1O00337 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SLC28A1O00337 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.72■□□□□ 0.91
SLC28A1O00337 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SLC28A1O00337 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SLC28A1O00337 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SLC28A1O00337 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SLC28A1O00337 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SLC28A1O00337 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SLC28A1O00337 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SLC28A1O00337 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
SLC28A1O00337 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.71■□□□□ 0.91
SLC28A1O00337 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.71■□□□□ 0.91
SLC28A1O00337 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SLC28A1O00337 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SLC28A1O00337 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.71■□□□□ 0.91
SLC28A1O00337 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
SLC28A1O00337 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.91
SLC28A1O00337 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.7■□□□□ 0.9
SLC28A1O00337 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SLC28A1O00337 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SLC28A1O00337 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC28A1O00337 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC28A1O00337 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.7■□□□□ 0.9
SLC28A1O00337 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.7■□□□□ 0.9
SLC28A1O00337 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.7■□□□□ 0.9
SLC28A1O00337 DUX4L19-201ENST00000557448 1267 ntBASIC20.7■□□□□ 0.9
SLC28A1O00337 AL138724.1-201ENST00000606771 1088 ntBASIC20.7■□□□□ 0.9
SLC28A1O00337 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.7■□□□□ 0.9
SLC28A1O00337 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.7■□□□□ 0.9
SLC28A1O00337 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC28A1O00337 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC28A1O00337 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.7■□□□□ 0.9
SLC28A1O00337 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC28A1O00337 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC28A1O00337 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.7■□□□□ 0.9
SLC28A1O00337 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SLC28A1O00337 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SLC28A1O00337 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SLC28A1O00337 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC28A1O00337 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.69■□□□□ 0.9
SLC28A1O00337 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SLC28A1O00337 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SLC28A1O00337 AC104564.3-201ENST00000582367 638 ntBASIC20.69■□□□□ 0.9
SLC28A1O00337 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC28A1O00337 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.69■□□□□ 0.9
SLC28A1O00337 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.69■□□□□ 0.9
SLC28A1O00337 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC28A1O00337 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SLC28A1O00337 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC28A1O00337 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC28A1O00337 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.69■□□□□ 0.9
SLC28A1O00337 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SLC28A1O00337 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC28A1O00337 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.68■□□□□ 0.9
SLC28A1O00337 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC28A1O00337 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
SLC28A1O00337 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.68■□□□□ 0.9
SLC28A1O00337 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC28A1O00337 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SLC28A1O00337 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.68■□□□□ 0.9
SLC28A1O00337 AL356441.2-201ENST00000443009 864 ntBASIC20.68■□□□□ 0.9
SLC28A1O00337 AC010525.1-201ENST00000585559 441 ntBASIC20.68■□□□□ 0.9
SLC28A1O00337 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.68■□□□□ 0.9
SLC28A1O00337 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SLC28A1O00337 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SLC28A1O00337 OXCT2P1-201ENST00000447263 1535 ntBASIC20.68■□□□□ 0.9
SLC28A1O00337 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SLC28A1O00337 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC28A1O00337 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SLC28A1O00337 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC28A1O00337 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC28A1O00337 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC28A1O00337 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC28A1O00337 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC28A1O00337 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SLC28A1O00337 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.67■□□□□ 0.9
SLC28A1O00337 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.67■□□□□ 0.9
SLC28A1O00337 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SLC28A1O00337 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms