Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 PARP1-210ENST00000629232 477 ntTSL 5 BASIC29.82■■■□□ 2.36
CCDC61Q9Y6R9 MYCNOS-205ENST00000641950 531 ntBASIC29.82■■■□□ 2.36
CCDC61Q9Y6R9 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 SERP1-208ENST00000491660 830 ntTSL 2 BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 AC083906.2-201ENST00000511578 360 ntBASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC61Q9Y6R9 TSPY6P-201ENST00000448518 926 ntBASIC29.8■■■□□ 2.36
CCDC61Q9Y6R9 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC29.8■■■□□ 2.36
CCDC61Q9Y6R9 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC29.8■■■□□ 2.36
CCDC61Q9Y6R9 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
CCDC61Q9Y6R9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
CCDC61Q9Y6R9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
CCDC61Q9Y6R9 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
CCDC61Q9Y6R9 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
CCDC61Q9Y6R9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
CCDC61Q9Y6R9 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC29.8■■■□□ 2.36
CCDC61Q9Y6R9 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CCDC61Q9Y6R9 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC29.79■■■□□ 2.36
CCDC61Q9Y6R9 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CCDC61Q9Y6R9 AC007322.1-201ENST00000426983 750 ntBASIC29.79■■■□□ 2.36
CCDC61Q9Y6R9 GUSBP6-202ENST00000438529 1198 ntBASIC29.79■■■□□ 2.36
CCDC61Q9Y6R9 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC29.79■■■□□ 2.36
CCDC61Q9Y6R9 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC29.79■■■□□ 2.36
CCDC61Q9Y6R9 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC29.78■■■□□ 2.36
CCDC61Q9Y6R9 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC29.78■■■□□ 2.36
CCDC61Q9Y6R9 SLC7A5P2-201ENST00000553010 536 ntBASIC29.78■■■□□ 2.36
CCDC61Q9Y6R9 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC29.78■■■□□ 2.36
CCDC61Q9Y6R9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC61Q9Y6R9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC29.78■■■□□ 2.36
CCDC61Q9Y6R9 AC005181.1-201ENST00000604782 1256 ntBASIC29.78■■■□□ 2.36
CCDC61Q9Y6R9 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC61Q9Y6R9 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC29.78■■■□□ 2.36
CCDC61Q9Y6R9 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC61Q9Y6R9 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC29.77■■■□□ 2.36
CCDC61Q9Y6R9 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CCDC61Q9Y6R9 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC29.77■■■□□ 2.36
CCDC61Q9Y6R9 BRI3-207ENST00000539286 699 ntTSL 2 BASIC29.77■■■□□ 2.36
CCDC61Q9Y6R9 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC29.77■■■□□ 2.36
CCDC61Q9Y6R9 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC29.77■■■□□ 2.36
CCDC61Q9Y6R9 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC29.77■■■□□ 2.36
CCDC61Q9Y6R9 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
CCDC61Q9Y6R9 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC29.77■■■□□ 2.36
CCDC61Q9Y6R9 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC29.77■■■□□ 2.36
CCDC61Q9Y6R9 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
CCDC61Q9Y6R9 METTL15-202ENST00000403099 795 ntTSL 5 BASIC29.76■■■□□ 2.35
CCDC61Q9Y6R9 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
CCDC61Q9Y6R9 OAS3-207ENST00000551007 998 ntTSL 2 BASIC29.76■■■□□ 2.35
CCDC61Q9Y6R9 AC138907.5-202ENST00000569484 235 ntBASIC29.76■■■□□ 2.35
CCDC61Q9Y6R9 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC29.76■■■□□ 2.35
CCDC61Q9Y6R9 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
CCDC61Q9Y6R9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
CCDC61Q9Y6R9 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
CCDC61Q9Y6R9 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CCDC61Q9Y6R9 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CCDC61Q9Y6R9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CCDC61Q9Y6R9 AC010141.2-201ENST00000452426 721 ntBASIC29.75■■■□□ 2.35
CCDC61Q9Y6R9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC29.75■■■□□ 2.35
CCDC61Q9Y6R9 AP004607.7-201ENST00000527152 1677 ntBASIC29.75■■■□□ 2.35
CCDC61Q9Y6R9 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC29.74■■■□□ 2.35
CCDC61Q9Y6R9 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CCDC61Q9Y6R9 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CCDC61Q9Y6R9 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CCDC61Q9Y6R9 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC29.74■■■□□ 2.35
CCDC61Q9Y6R9 CNN2P6-201ENST00000439038 900 ntBASIC29.74■■■□□ 2.35
CCDC61Q9Y6R9 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
CCDC61Q9Y6R9 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC29.74■■■□□ 2.35
CCDC61Q9Y6R9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CCDC61Q9Y6R9 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
CCDC61Q9Y6R9 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC29.73■■■□□ 2.35
CCDC61Q9Y6R9 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC29.72■■■□□ 2.35
CCDC61Q9Y6R9 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC29.72■■■□□ 2.35
CCDC61Q9Y6R9 THRA-202ENST00000394121 2260 ntTSL 2 BASIC29.72■■■□□ 2.35
CCDC61Q9Y6R9 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC29.72■■■□□ 2.35
CCDC61Q9Y6R9 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC29.72■■■□□ 2.35
CCDC61Q9Y6R9 KRT18P20-201ENST00000548986 1279 ntBASIC29.72■■■□□ 2.35
CCDC61Q9Y6R9 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC29.72■■■□□ 2.35
CCDC61Q9Y6R9 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
CCDC61Q9Y6R9 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
CCDC61Q9Y6R9 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC29.71■■■□□ 2.35
CCDC61Q9Y6R9 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
CCDC61Q9Y6R9 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
CCDC61Q9Y6R9 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC29.71■■■□□ 2.35
CCDC61Q9Y6R9 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC29.71■■■□□ 2.35
CCDC61Q9Y6R9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CCDC61Q9Y6R9 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC29.71■■■□□ 2.35
CCDC61Q9Y6R9 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
CCDC61Q9Y6R9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC29.71■■■□□ 2.35
CCDC61Q9Y6R9 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms