Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC41.39■■■■■ 4.22
SHROOM4Q9ULL8 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC41.39■■■■■ 4.22
SHROOM4Q9ULL8 AC007322.1-201ENST00000426983 750 ntBASIC41.39■■■■■ 4.22
SHROOM4Q9ULL8 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC41.39■■■■■ 4.22
SHROOM4Q9ULL8 ANOS2P-203ENST00000472227 1816 ntBASIC41.39■■■■■ 4.22
SHROOM4Q9ULL8 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC41.38■■■■■ 4.21
SHROOM4Q9ULL8 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC41.38■■■■■ 4.21
SHROOM4Q9ULL8 AC098590.1-201ENST00000468126 897 ntBASIC41.38■■■■■ 4.21
SHROOM4Q9ULL8 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC41.38■■■■■ 4.21
SHROOM4Q9ULL8 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC41.38■■■■■ 4.21
SHROOM4Q9ULL8 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC41.38■■■■■ 4.21
SHROOM4Q9ULL8 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC41.38■■■■■ 4.21
SHROOM4Q9ULL8 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC41.37■■■■■ 4.21
SHROOM4Q9ULL8 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC41.36■■■■■ 4.21
SHROOM4Q9ULL8 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC41.36■■■■■ 4.21
SHROOM4Q9ULL8 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC41.36■■■■■ 4.21
SHROOM4Q9ULL8 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC41.36■■■■■ 4.21
SHROOM4Q9ULL8 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC41.36■■■■■ 4.21
SHROOM4Q9ULL8 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC41.36■■■■■ 4.21
SHROOM4Q9ULL8 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC41.36■■■■■ 4.21
SHROOM4Q9ULL8 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC41.36■■■■■ 4.21
SHROOM4Q9ULL8 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC41.36■■■■■ 4.21
SHROOM4Q9ULL8 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC41.36■■■■■ 4.21
SHROOM4Q9ULL8 AC087239.1-201ENST00000622671 572 ntBASIC41.35■■■■■ 4.21
SHROOM4Q9ULL8 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC41.35■■■■■ 4.21
SHROOM4Q9ULL8 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC41.35■■■■■ 4.21
SHROOM4Q9ULL8 AC133552.2-202ENST00000575694 574 ntBASIC41.34■■■■■ 4.21
SHROOM4Q9ULL8 SMUG1P1-201ENST00000590640 811 ntBASIC41.34■■■■■ 4.21
SHROOM4Q9ULL8 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC41.34■■■■■ 4.21
SHROOM4Q9ULL8 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC41.34■■■■■ 4.21
SHROOM4Q9ULL8 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC41.34■■■■■ 4.21
SHROOM4Q9ULL8 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC41.34■■■■■ 4.21
SHROOM4Q9ULL8 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC41.34■■■■■ 4.21
SHROOM4Q9ULL8 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC41.34■■■■■ 4.21
SHROOM4Q9ULL8 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC41.33■■■■■ 4.21
SHROOM4Q9ULL8 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC41.33■■■■■ 4.21
SHROOM4Q9ULL8 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC41.33■■■■■ 4.21
SHROOM4Q9ULL8 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC41.33■■■■■ 4.21
SHROOM4Q9ULL8 UBE2DNL-204ENST00000602536 740 ntBASIC41.33■■■■■ 4.21
SHROOM4Q9ULL8 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC41.32■■■■■ 4.21
SHROOM4Q9ULL8 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC41.32■■■■■ 4.21
SHROOM4Q9ULL8 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC41.32■■■■■ 4.2
SHROOM4Q9ULL8 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC41.32■■■■■ 4.2
SHROOM4Q9ULL8 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC41.31■■■■■ 4.2
SHROOM4Q9ULL8 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC41.31■■■■■ 4.2
SHROOM4Q9ULL8 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC41.31■■■■■ 4.2
SHROOM4Q9ULL8 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC41.31■■■■■ 4.2
SHROOM4Q9ULL8 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC41.31■■■■■ 4.2
SHROOM4Q9ULL8 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC41.3■■■■■ 4.2
SHROOM4Q9ULL8 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC41.3■■■■■ 4.2
SHROOM4Q9ULL8 KRT87P-202ENST00000534226 1464 ntBASIC41.3■■■■■ 4.2
SHROOM4Q9ULL8 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC41.3■■■■■ 4.2
SHROOM4Q9ULL8 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC41.29■■■■■ 4.2
SHROOM4Q9ULL8 CNN2P6-201ENST00000439038 900 ntBASIC41.29■■■■■ 4.2
SHROOM4Q9ULL8 RPS2P52-201ENST00000469610 820 ntBASIC41.29■■■■■ 4.2
SHROOM4Q9ULL8 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC41.29■■■■■ 4.2
SHROOM4Q9ULL8 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC41.29■■■■■ 4.2
SHROOM4Q9ULL8 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC41.29■■■■■ 4.2
SHROOM4Q9ULL8 AC068587.7-201ENST00000641602 218 ntBASIC41.28■■■■■ 4.2
SHROOM4Q9ULL8 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC41.28■■■■■ 4.2
SHROOM4Q9ULL8 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC41.28■■■■■ 4.2
SHROOM4Q9ULL8 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC41.27■■■■■ 4.2
SHROOM4Q9ULL8 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC41.27■■■■■ 4.2
SHROOM4Q9ULL8 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC41.27■■■■■ 4.2
SHROOM4Q9ULL8 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC41.27■■■■■ 4.2
SHROOM4Q9ULL8 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC41.27■■■■■ 4.2
SHROOM4Q9ULL8 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC41.27■■■■■ 4.2
SHROOM4Q9ULL8 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC41.27■■■■■ 4.2
SHROOM4Q9ULL8 MYCNOS-205ENST00000641950 531 ntBASIC41.27■■■■■ 4.2
SHROOM4Q9ULL8 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC41.26■■■■■ 4.2
SHROOM4Q9ULL8 DUSP8P3-201ENST00000399571 1760 ntBASIC41.26■■■■■ 4.2
SHROOM4Q9ULL8 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC41.26■■■■■ 4.2
SHROOM4Q9ULL8 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC41.26■■■■■ 4.2
SHROOM4Q9ULL8 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC41.26■■■■■ 4.2
SHROOM4Q9ULL8 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC41.26■■■■■ 4.2
SHROOM4Q9ULL8 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC41.26■■■■■ 4.2
SHROOM4Q9ULL8 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC41.26■■■■■ 4.2
SHROOM4Q9ULL8 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC41.26■■■■■ 4.19
SHROOM4Q9ULL8 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC41.25■■■■■ 4.19
SHROOM4Q9ULL8 AC010141.3-201ENST00000456659 717 ntBASIC41.25■■■■■ 4.19
SHROOM4Q9ULL8 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC41.25■■■■■ 4.19
SHROOM4Q9ULL8 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC41.25■■■■■ 4.19
SHROOM4Q9ULL8 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC41.25■■■■■ 4.19
SHROOM4Q9ULL8 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC41.25■■■■■ 4.19
SHROOM4Q9ULL8 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC41.24■■■■■ 4.19
SHROOM4Q9ULL8 APTR-203ENST00000430801 583 ntTSL 5 BASIC41.24■■■■■ 4.19
SHROOM4Q9ULL8 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC41.23■■■■■ 4.19
SHROOM4Q9ULL8 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC41.23■■■■■ 4.19
SHROOM4Q9ULL8 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC41.23■■■■■ 4.19
SHROOM4Q9ULL8 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC41.23■■■■■ 4.19
SHROOM4Q9ULL8 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC41.23■■■■■ 4.19
SHROOM4Q9ULL8 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC41.23■■■■■ 4.19
SHROOM4Q9ULL8 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC41.22■■■■■ 4.19
SHROOM4Q9ULL8 KRT18P29-201ENST00000397031 1267 ntBASIC41.22■■■■■ 4.19
SHROOM4Q9ULL8 AF201337.1-201ENST00000520239 748 ntBASIC41.22■■■■■ 4.19
SHROOM4Q9ULL8 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC41.22■■■■■ 4.19
SHROOM4Q9ULL8 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC41.22■■■■■ 4.19
SHROOM4Q9ULL8 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC41.21■■■■■ 4.19
SHROOM4Q9ULL8 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC41.21■■■■■ 4.19
SHROOM4Q9ULL8 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC41.21■■■■■ 4.19
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms