Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.04■□□□□ 0.8
USE1Q9NZ43 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
USE1Q9NZ43 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.04■□□□□ 0.8
USE1Q9NZ43 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USE1Q9NZ43 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.04■□□□□ 0.8
USE1Q9NZ43 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.04■□□□□ 0.8
USE1Q9NZ43 AL157384.1-201ENST00000445995 2473 ntBASIC20.04■□□□□ 0.8
USE1Q9NZ43 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.04■□□□□ 0.8
USE1Q9NZ43 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.04■□□□□ 0.8
USE1Q9NZ43 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USE1Q9NZ43 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
USE1Q9NZ43 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USE1Q9NZ43 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
USE1Q9NZ43 AF106564.1-201ENST00000607058 2553 ntBASIC20.03■□□□□ 0.8
USE1Q9NZ43 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USE1Q9NZ43 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USE1Q9NZ43 THA1P-201ENST00000590384 1145 ntBASIC20.03■□□□□ 0.8
USE1Q9NZ43 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
USE1Q9NZ43 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USE1Q9NZ43 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.03■□□□□ 0.8
USE1Q9NZ43 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USE1Q9NZ43 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
USE1Q9NZ43 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.03■□□□□ 0.8
USE1Q9NZ43 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USE1Q9NZ43 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USE1Q9NZ43 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USE1Q9NZ43 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
USE1Q9NZ43 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.02■□□□□ 0.8
USE1Q9NZ43 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.02■□□□□ 0.8
USE1Q9NZ43 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USE1Q9NZ43 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USE1Q9NZ43 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USE1Q9NZ43 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
USE1Q9NZ43 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.02■□□□□ 0.8
USE1Q9NZ43 ABHD17AP5-201ENST00000580133 923 ntBASIC20.02■□□□□ 0.8
USE1Q9NZ43 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USE1Q9NZ43 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USE1Q9NZ43 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USE1Q9NZ43 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
USE1Q9NZ43 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USE1Q9NZ43 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
USE1Q9NZ43 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.02■□□□□ 0.79
USE1Q9NZ43 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
USE1Q9NZ43 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.02■□□□□ 0.79
USE1Q9NZ43 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USE1Q9NZ43 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USE1Q9NZ43 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
USE1Q9NZ43 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USE1Q9NZ43 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USE1Q9NZ43 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USE1Q9NZ43 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
USE1Q9NZ43 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USE1Q9NZ43 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
USE1Q9NZ43 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.01■□□□□ 0.79
USE1Q9NZ43 AC129492.7-201ENST00000622992 756 ntBASIC20.01■□□□□ 0.79
USE1Q9NZ43 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
USE1Q9NZ43 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USE1Q9NZ43 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USE1Q9NZ43 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USE1Q9NZ43 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
USE1Q9NZ43 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.01■□□□□ 0.79
USE1Q9NZ43 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USE1Q9NZ43 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20■□□□□ 0.79
USE1Q9NZ43 KRT18P24-201ENST00000344739 1156 ntBASIC20■□□□□ 0.79
USE1Q9NZ43 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20■□□□□ 0.79
USE1Q9NZ43 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USE1Q9NZ43 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20■□□□□ 0.79
USE1Q9NZ43 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USE1Q9NZ43 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20■□□□□ 0.79
USE1Q9NZ43 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20■□□□□ 0.79
USE1Q9NZ43 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20■□□□□ 0.79
USE1Q9NZ43 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
USE1Q9NZ43 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USE1Q9NZ43 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USE1Q9NZ43 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USE1Q9NZ43 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USE1Q9NZ43 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USE1Q9NZ43 DUX4L4-201ENST00000566884 1269 ntBASIC19.99■□□□□ 0.79
USE1Q9NZ43 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USE1Q9NZ43 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USE1Q9NZ43 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
USE1Q9NZ43 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
USE1Q9NZ43 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USE1Q9NZ43 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USE1Q9NZ43 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
USE1Q9NZ43 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
USE1Q9NZ43 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.98■□□□□ 0.79
USE1Q9NZ43 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USE1Q9NZ43 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USE1Q9NZ43 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
USE1Q9NZ43 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
USE1Q9NZ43 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.98■□□□□ 0.79
USE1Q9NZ43 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USE1Q9NZ43 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USE1Q9NZ43 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.98■□□□□ 0.79
USE1Q9NZ43 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
USE1Q9NZ43 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USE1Q9NZ43 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
USE1Q9NZ43 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
USE1Q9NZ43 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms