Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.63■□□□□ 0.73
DDX28Q9NUL7 KRT125P-201ENST00000546827 989 ntBASIC19.63■□□□□ 0.73
DDX28Q9NUL7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 AC092028.1-203ENST00000608262 953 ntBASIC19.63■□□□□ 0.73
DDX28Q9NUL7 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.62■□□□□ 0.73
DDX28Q9NUL7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
DDX28Q9NUL7 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
DDX28Q9NUL7 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
DDX28Q9NUL7 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.62■□□□□ 0.73
DDX28Q9NUL7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.62■□□□□ 0.73
DDX28Q9NUL7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
DDX28Q9NUL7 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
DDX28Q9NUL7 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DDX28Q9NUL7 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DDX28Q9NUL7 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.6■□□□□ 0.73
DDX28Q9NUL7 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DDX28Q9NUL7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
DDX28Q9NUL7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DDX28Q9NUL7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
DDX28Q9NUL7 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DDX28Q9NUL7 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DDX28Q9NUL7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DDX28Q9NUL7 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
DDX28Q9NUL7 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
DDX28Q9NUL7 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
DDX28Q9NUL7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
DDX28Q9NUL7 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
DDX28Q9NUL7 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
DDX28Q9NUL7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
DDX28Q9NUL7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
DDX28Q9NUL7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
DDX28Q9NUL7 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.58■□□□□ 0.72
DDX28Q9NUL7 AL353803.4-201ENST00000565882 1934 ntBASIC19.58■□□□□ 0.72
DDX28Q9NUL7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
DDX28Q9NUL7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.58■□□□□ 0.72
DDX28Q9NUL7 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
DDX28Q9NUL7 AC144652.1-201ENST00000609974 1624 ntBASIC19.58■□□□□ 0.72
DDX28Q9NUL7 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
DDX28Q9NUL7 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 MIR4787-201ENST00000607364 84 ntBASIC19.57■□□□□ 0.72
DDX28Q9NUL7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
DDX28Q9NUL7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms