Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 FEM1AP4-201ENST00000443167 1987 ntBASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC28BQ9BUN5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC28BQ9BUN5 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CCDC28BQ9BUN5 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC28BQ9BUN5 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC28BQ9BUN5 AC103724.3-201ENST00000564481 992 ntBASIC20.98■□□□□ 0.95
CCDC28BQ9BUN5 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CCDC28BQ9BUN5 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC28BQ9BUN5 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC28BQ9BUN5 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC28BQ9BUN5 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC28BQ9BUN5 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CCDC28BQ9BUN5 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 AC009102.2-201ENST00000606772 1639 ntBASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CCDC28BQ9BUN5 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CCDC28BQ9BUN5 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC28BQ9BUN5 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CCDC28BQ9BUN5 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC28BQ9BUN5 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC28BQ9BUN5 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
CCDC28BQ9BUN5 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC28BQ9BUN5 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC28BQ9BUN5 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC28BQ9BUN5 AC021242.3-201ENST00000607598 1377 ntBASIC20.95■□□□□ 0.94
CCDC28BQ9BUN5 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC28BQ9BUN5 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC28BQ9BUN5 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 LINC01521-201ENST00000504184 1943 ntBASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 AC007952.6-201ENST00000573168 2673 ntBASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 AC003957.1-201ENST00000625108 2673 ntBASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC28BQ9BUN5 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CCDC28BQ9BUN5 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC28BQ9BUN5 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC28BQ9BUN5 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC28BQ9BUN5 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC28BQ9BUN5 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CCDC28BQ9BUN5 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 YBX1P4-201ENST00000392794 808 ntBASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms