Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SLC25A24-204ENST00000569674 2357 ntBASIC19.07■□□□□ 0.64
SKA3Q8IX90 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SKA3Q8IX90 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA3Q8IX90 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.07■□□□□ 0.64
SKA3Q8IX90 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SKA3Q8IX90 AC142381.2-201ENST00000566120 298 ntBASIC19.07■□□□□ 0.64
SKA3Q8IX90 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SKA3Q8IX90 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.07■□□□□ 0.64
SKA3Q8IX90 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA3Q8IX90 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.07■□□□□ 0.64
SKA3Q8IX90 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SKA3Q8IX90 AL121603.2-201ENST00000557373 2117 ntBASIC19.07■□□□□ 0.64
SKA3Q8IX90 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
SKA3Q8IX90 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA3Q8IX90 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SKA3Q8IX90 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SKA3Q8IX90 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SKA3Q8IX90 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.06■□□□□ 0.64
SKA3Q8IX90 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.06■□□□□ 0.64
SKA3Q8IX90 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.06■□□□□ 0.64
SKA3Q8IX90 AC091305.1-201ENST00000479476 895 ntBASIC19.06■□□□□ 0.64
SKA3Q8IX90 AC079089.2-201ENST00000531211 1277 ntBASIC19.06■□□□□ 0.64
SKA3Q8IX90 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SKA3Q8IX90 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.06■□□□□ 0.64
SKA3Q8IX90 AC139530.1-201ENST00000575312 1977 ntBASIC19.06■□□□□ 0.64
SKA3Q8IX90 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SKA3Q8IX90 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SKA3Q8IX90 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SKA3Q8IX90 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SKA3Q8IX90 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
SKA3Q8IX90 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SKA3Q8IX90 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SKA3Q8IX90 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SKA3Q8IX90 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.05■□□□□ 0.64
SKA3Q8IX90 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SKA3Q8IX90 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.05■□□□□ 0.64
SKA3Q8IX90 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SKA3Q8IX90 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SKA3Q8IX90 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SKA3Q8IX90 AC242852.2-201ENST00000615738 1807 ntBASIC19.04■□□□□ 0.64
SKA3Q8IX90 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA3Q8IX90 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA3Q8IX90 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SKA3Q8IX90 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA3Q8IX90 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA3Q8IX90 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SKA3Q8IX90 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA3Q8IX90 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.04■□□□□ 0.64
SKA3Q8IX90 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.04■□□□□ 0.64
SKA3Q8IX90 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.04■□□□□ 0.64
SKA3Q8IX90 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.04■□□□□ 0.64
SKA3Q8IX90 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SKA3Q8IX90 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
SKA3Q8IX90 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.04■□□□□ 0.64
SKA3Q8IX90 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA3Q8IX90 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.04■□□□□ 0.64
SKA3Q8IX90 OXCT2P1-201ENST00000447263 1535 ntBASIC19.04■□□□□ 0.64
SKA3Q8IX90 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA3Q8IX90 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SKA3Q8IX90 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA3Q8IX90 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.03■□□□□ 0.64
SKA3Q8IX90 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.03■□□□□ 0.64
SKA3Q8IX90 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA3Q8IX90 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA3Q8IX90 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SKA3Q8IX90 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA3Q8IX90 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA3Q8IX90 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SKA3Q8IX90 IGHV3-19-201ENST00000521488 291 ntBASIC19.03■□□□□ 0.64
SKA3Q8IX90 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.03■□□□□ 0.64
SKA3Q8IX90 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SKA3Q8IX90 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA3Q8IX90 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.03■□□□□ 0.64
SKA3Q8IX90 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SKA3Q8IX90 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA3Q8IX90 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SKA3Q8IX90 ECEL1P1-201ENST00000373592 1742 ntBASIC19.03■□□□□ 0.64
SKA3Q8IX90 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
SKA3Q8IX90 TSPY26P-201ENST00000476365 1326 ntBASIC19.02■□□□□ 0.64
SKA3Q8IX90 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.02■□□□□ 0.64
SKA3Q8IX90 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA3Q8IX90 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.02■□□□□ 0.64
SKA3Q8IX90 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SKA3Q8IX90 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA3Q8IX90 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA3Q8IX90 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA3Q8IX90 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SKA3Q8IX90 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.02■□□□□ 0.64
SKA3Q8IX90 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.02■□□□□ 0.64
SKA3Q8IX90 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SKA3Q8IX90 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SKA3Q8IX90 LINC00526-201ENST00000581067 1875 ntBASIC19.02■□□□□ 0.64
SKA3Q8IX90 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SKA3Q8IX90 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.02■□□□□ 0.64
SKA3Q8IX90 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SKA3Q8IX90 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SKA3Q8IX90 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
SKA3Q8IX90 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SKA3Q8IX90 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SKA3Q8IX90 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms