Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13CQ709C8 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13CQ709C8 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
VPS13CQ709C8 MYC-209ENST00000641252 345 ntBASIC18.19■□□□□ 0.5
VPS13CQ709C8 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13CQ709C8 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13CQ709C8 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13CQ709C8 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13CQ709C8 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13CQ709C8 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.19■□□□□ 0.5
VPS13CQ709C8 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13CQ709C8 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS13CQ709C8 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
VPS13CQ709C8 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13CQ709C8 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS13CQ709C8 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13CQ709C8 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13CQ709C8 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13CQ709C8 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13CQ709C8 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS13CQ709C8 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13CQ709C8 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS13CQ709C8 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13CQ709C8 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13CQ709C8 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13CQ709C8 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
VPS13CQ709C8 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13CQ709C8 AC007322.4-201ENST00000509611 723 ntBASIC18.17■□□□□ 0.5
VPS13CQ709C8 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13CQ709C8 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
VPS13CQ709C8 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
VPS13CQ709C8 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13CQ709C8 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS13CQ709C8 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS13CQ709C8 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13CQ709C8 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS13CQ709C8 AC133552.2-202ENST00000575694 574 ntBASIC18.17■□□□□ 0.5
VPS13CQ709C8 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS13CQ709C8 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VPS13CQ709C8 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.17■□□□□ 0.5
VPS13CQ709C8 SMUG1P1-201ENST00000590640 811 ntBASIC18.17■□□□□ 0.5
VPS13CQ709C8 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
VPS13CQ709C8 DUSP8P3-201ENST00000399571 1760 ntBASIC18.17■□□□□ 0.5
VPS13CQ709C8 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13CQ709C8 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13CQ709C8 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13CQ709C8 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13CQ709C8 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS13CQ709C8 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13CQ709C8 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
VPS13CQ709C8 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS13CQ709C8 MKRN4P-201ENST00000444706 1521 ntBASIC18.16■□□□□ 0.5
VPS13CQ709C8 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13CQ709C8 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13CQ709C8 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13CQ709C8 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13CQ709C8 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS13CQ709C8 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13CQ709C8 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
VPS13CQ709C8 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13CQ709C8 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
VPS13CQ709C8 LINC01124-201ENST00000409786 2117 ntBASIC18.15■□□□□ 0.5
VPS13CQ709C8 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VPS13CQ709C8 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13CQ709C8 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13CQ709C8 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13CQ709C8 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13CQ709C8 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
VPS13CQ709C8 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VPS13CQ709C8 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
VPS13CQ709C8 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13CQ709C8 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13CQ709C8 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13CQ709C8 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13CQ709C8 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS13CQ709C8 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS13CQ709C8 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13CQ709C8 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13CQ709C8 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS13CQ709C8 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.14■□□□□ 0.5
VPS13CQ709C8 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13CQ709C8 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13CQ709C8 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13CQ709C8 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS13CQ709C8 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13CQ709C8 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS13CQ709C8 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13CQ709C8 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS13CQ709C8 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13CQ709C8 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
VPS13CQ709C8 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13CQ709C8 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS13CQ709C8 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS13CQ709C8 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS13CQ709C8 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.14■□□□□ 0.49
VPS13CQ709C8 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
VPS13CQ709C8 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13CQ709C8 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS13CQ709C8 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13CQ709C8 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms