Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 AC010525.1-201ENST00000585559 441 ntBASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC40Q4G0X9 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 AC079089.2-201ENST00000531211 1277 ntBASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 AL138724.1-201ENST00000606771 1088 ntBASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 AC068587.7-201ENST00000641602 218 ntBASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
CCDC40Q4G0X9 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC40Q4G0X9 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
CCDC40Q4G0X9 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC40Q4G0X9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC40Q4G0X9 AL136116.3-201ENST00000402907 1138 ntBASIC23.73■■□□□ 1.39
CCDC40Q4G0X9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC40Q4G0X9 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC40Q4G0X9 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC40Q4G0X9 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC40Q4G0X9 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 AC131212.1-201ENST00000613771 668 ntBASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 AC087239.1-201ENST00000622671 572 ntBASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC40Q4G0X9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
CCDC40Q4G0X9 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC23.71■■□□□ 1.39
CCDC40Q4G0X9 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC40Q4G0X9 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC40Q4G0X9 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC23.71■■□□□ 1.39
CCDC40Q4G0X9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.71■■□□□ 1.39
CCDC40Q4G0X9 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC40Q4G0X9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.71■■□□□ 1.39
CCDC40Q4G0X9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC40Q4G0X9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC40Q4G0X9 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.39
CCDC40Q4G0X9 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
CCDC40Q4G0X9 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
CCDC40Q4G0X9 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 AC136469.2-201ENST00000623944 1028 ntBASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC40Q4G0X9 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 AC011298.3-201ENST00000615796 283 ntBASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 FAM99A-202ENST00000538190 1989 ntBASIC23.69■■□□□ 1.38
CCDC40Q4G0X9 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms