Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 AC005181.1-201ENST00000604782 1256 ntBASIC20.73■□□□□ 0.91
COL28A1Q2UY09 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL28A1Q2UY09 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 SMUG1P1-201ENST00000590640 811 ntBASIC20.72■□□□□ 0.91
COL28A1Q2UY09 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL28A1Q2UY09 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 AL596275.1-201ENST00000423464 877 ntBASIC20.71■□□□□ 0.91
COL28A1Q2UY09 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 AC231657.2-201ENST00000624556 255 ntBASIC20.71■□□□□ 0.91
COL28A1Q2UY09 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL28A1Q2UY09 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COL28A1Q2UY09 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 AC007322.1-201ENST00000426983 750 ntBASIC20.69■□□□□ 0.9
COL28A1Q2UY09 RNA5SP413-201ENST00000516373 109 ntBASIC20.69■□□□□ 0.9
COL28A1Q2UY09 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.69■□□□□ 0.9
COL28A1Q2UY09 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
COL28A1Q2UY09 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL28A1Q2UY09 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL28A1Q2UY09 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.68■□□□□ 0.9
COL28A1Q2UY09 AC098934.4-201ENST00000564127 592 ntBASIC20.68■□□□□ 0.9
COL28A1Q2UY09 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.68■□□□□ 0.9
COL28A1Q2UY09 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL28A1Q2UY09 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
COL28A1Q2UY09 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL28A1Q2UY09 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL28A1Q2UY09 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL28A1Q2UY09 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms