Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
H3F3AP84243 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.34■□□□□ 0.69
H3F3AP84243 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
H3F3AP84243 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.34■□□□□ 0.69
H3F3AP84243 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.34■□□□□ 0.69
H3F3AP84243 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
H3F3AP84243 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
H3F3AP84243 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
H3F3AP84243 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
H3F3AP84243 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
H3F3AP84243 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
H3F3AP84243 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
H3F3AP84243 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
H3F3AP84243 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
H3F3AP84243 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.33■□□□□ 0.68
H3F3AP84243 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.33■□□□□ 0.68
H3F3AP84243 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
H3F3AP84243 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
H3F3AP84243 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
H3F3AP84243 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
H3F3AP84243 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
H3F3AP84243 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
H3F3AP84243 IRS3P-201ENST00000223076 1006 ntBASIC19.32■□□□□ 0.68
H3F3AP84243 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
H3F3AP84243 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
H3F3AP84243 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
H3F3AP84243 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.32■□□□□ 0.68
H3F3AP84243 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.32■□□□□ 0.68
H3F3AP84243 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.32■□□□□ 0.68
H3F3AP84243 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.32■□□□□ 0.68
H3F3AP84243 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
H3F3AP84243 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
H3F3AP84243 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
H3F3AP84243 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
H3F3AP84243 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
H3F3AP84243 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
H3F3AP84243 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
H3F3AP84243 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
H3F3AP84243 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
H3F3AP84243 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
H3F3AP84243 AC092053.2-201ENST00000640557 1818 ntBASIC19.31■□□□□ 0.68
H3F3AP84243 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
H3F3AP84243 AC105233.4-201ENST00000642045 216 ntBASIC19.31■□□□□ 0.68
H3F3AP84243 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.31■□□□□ 0.68
H3F3AP84243 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
H3F3AP84243 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
H3F3AP84243 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
H3F3AP84243 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.31■□□□□ 0.68
H3F3AP84243 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.3■□□□□ 0.68
H3F3AP84243 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
H3F3AP84243 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
H3F3AP84243 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.3■□□□□ 0.68
H3F3AP84243 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
H3F3AP84243 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
H3F3AP84243 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
H3F3AP84243 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
H3F3AP84243 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
H3F3AP84243 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.3■□□□□ 0.68
H3F3AP84243 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.3■□□□□ 0.68
H3F3AP84243 AC012414.1-201ENST00000556676 535 ntBASIC19.3■□□□□ 0.68
H3F3AP84243 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.3■□□□□ 0.68
H3F3AP84243 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.29■□□□□ 0.68
H3F3AP84243 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
H3F3AP84243 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
H3F3AP84243 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
H3F3AP84243 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
H3F3AP84243 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
H3F3AP84243 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
H3F3AP84243 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
H3F3AP84243 ZNRF2P3-201ENST00000424200 374 ntBASIC19.29■□□□□ 0.68
H3F3AP84243 AL358852.1-201ENST00000623174 1268 ntBASIC19.29■□□□□ 0.68
H3F3AP84243 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
H3F3AP84243 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
H3F3AP84243 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
H3F3AP84243 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
H3F3AP84243 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.28■□□□□ 0.68
H3F3AP84243 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
H3F3AP84243 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.28■□□□□ 0.68
H3F3AP84243 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.28■□□□□ 0.68
H3F3AP84243 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.28■□□□□ 0.68
H3F3AP84243 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.28■□□□□ 0.68
H3F3AP84243 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.28■□□□□ 0.68
H3F3AP84243 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 AL354811.1-201ENST00000610286 706 ntBASIC19.28■□□□□ 0.68
H3F3AP84243 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
H3F3AP84243 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.28■□□□□ 0.68
H3F3AP84243 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms