Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
PDLIM4P50479 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM4P50479 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM4P50479 KRT19P1-201ENST00000405746 1186 ntBASIC18.32■□□□□ 0.52
PDLIM4P50479 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
PDLIM4P50479 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.32■□□□□ 0.52
PDLIM4P50479 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
PDLIM4P50479 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.32■□□□□ 0.52
PDLIM4P50479 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.32■□□□□ 0.52
PDLIM4P50479 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM4P50479 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
PDLIM4P50479 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM4P50479 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM4P50479 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM4P50479 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM4P50479 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
PDLIM4P50479 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
PDLIM4P50479 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.31■□□□□ 0.52
PDLIM4P50479 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.31■□□□□ 0.52
PDLIM4P50479 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM4P50479 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM4P50479 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM4P50479 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.31■□□□□ 0.52
PDLIM4P50479 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.31■□□□□ 0.52
PDLIM4P50479 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM4P50479 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PDLIM4P50479 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM4P50479 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM4P50479 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM4P50479 ID1-201ENST00000376105 1233 ntBASIC18.3■□□□□ 0.52
PDLIM4P50479 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM4P50479 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.3■□□□□ 0.52
PDLIM4P50479 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM4P50479 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM4P50479 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.3■□□□□ 0.52
PDLIM4P50479 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.3■□□□□ 0.52
PDLIM4P50479 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.3■□□□□ 0.52
PDLIM4P50479 AP004607.4-201ENST00000530158 1459 ntBASIC18.3■□□□□ 0.52
PDLIM4P50479 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM4P50479 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM4P50479 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM4P50479 DUSP8P5-201ENST00000422884 1815 ntBASIC18.3■□□□□ 0.52
PDLIM4P50479 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
PDLIM4P50479 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM4P50479 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM4P50479 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM4P50479 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM4P50479 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM4P50479 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.29■□□□□ 0.52
PDLIM4P50479 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM4P50479 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PDLIM4P50479 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.29■□□□□ 0.52
PDLIM4P50479 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM4P50479 AC006015.1-201ENST00000429970 570 ntBASIC18.29■□□□□ 0.52
PDLIM4P50479 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.29■□□□□ 0.52
PDLIM4P50479 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PDLIM4P50479 AC080038.1-201ENST00000611274 1154 ntBASIC18.29■□□□□ 0.52
PDLIM4P50479 AC004854.2-201ENST00000608450 1441 ntBASIC18.29■□□□□ 0.52
PDLIM4P50479 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM4P50479 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.29■□□□□ 0.52
PDLIM4P50479 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PDLIM4P50479 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PDLIM4P50479 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PDLIM4P50479 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PDLIM4P50479 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC18.28■□□□□ 0.52
PDLIM4P50479 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDLIM4P50479 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.28■□□□□ 0.52
PDLIM4P50479 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.28■□□□□ 0.52
PDLIM4P50479 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDLIM4P50479 AC079140.4-201ENST00000507448 529 ntBASIC18.28■□□□□ 0.52
PDLIM4P50479 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.28■□□□□ 0.52
PDLIM4P50479 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.28■□□□□ 0.52
PDLIM4P50479 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDLIM4P50479 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
PDLIM4P50479 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDLIM4P50479 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.28■□□□□ 0.52
PDLIM4P50479 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDLIM4P50479 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PDLIM4P50479 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PDLIM4P50479 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDLIM4P50479 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.27■□□□□ 0.52
PDLIM4P50479 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDLIM4P50479 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDLIM4P50479 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDLIM4P50479 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PDLIM4P50479 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
PDLIM4P50479 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDLIM4P50479 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.27■□□□□ 0.52
PDLIM4P50479 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.27■□□□□ 0.52
PDLIM4P50479 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.27■□□□□ 0.52
PDLIM4P50479 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.27■□□□□ 0.52
PDLIM4P50479 KRT18P61-201ENST00000585825 1298 ntBASIC18.27■□□□□ 0.52
PDLIM4P50479 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDLIM4P50479 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
PDLIM4P50479 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PDLIM4P50479 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
PDLIM4P50479 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.27■□□□□ 0.51
PDLIM4P50479 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.27■□□□□ 0.51
PDLIM4P50479 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC18.26■□□□□ 0.51
PDLIM4P50479 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms