Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RFX3P48380 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.22■□□□□ 0.83
RFX3P48380 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
RFX3P48380 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RFX3P48380 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.22■□□□□ 0.83
RFX3P48380 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
RFX3P48380 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFX3P48380 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFX3P48380 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFX3P48380 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFX3P48380 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFX3P48380 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.21■□□□□ 0.83
RFX3P48380 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.21■□□□□ 0.83
RFX3P48380 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.21■□□□□ 0.83
RFX3P48380 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.21■□□□□ 0.83
RFX3P48380 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFX3P48380 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
RFX3P48380 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFX3P48380 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFX3P48380 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.21■□□□□ 0.83
RFX3P48380 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFX3P48380 AC127496.7-201ENST00000625110 1798 ntBASIC20.21■□□□□ 0.83
RFX3P48380 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RFX3P48380 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFX3P48380 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.21■□□□□ 0.83
RFX3P48380 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.83
RFX3P48380 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RFX3P48380 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX3P48380 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.2■□□□□ 0.82
RFX3P48380 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX3P48380 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.2■□□□□ 0.82
RFX3P48380 AC110285.6-201ENST00000617652 491 ntBASIC20.2■□□□□ 0.82
RFX3P48380 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.2■□□□□ 0.82
RFX3P48380 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.2■□□□□ 0.82
RFX3P48380 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.2■□□□□ 0.82
RFX3P48380 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RFX3P48380 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
RFX3P48380 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX3P48380 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX3P48380 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.2■□□□□ 0.82
RFX3P48380 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFX3P48380 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
RFX3P48380 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.19■□□□□ 0.82
RFX3P48380 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX3P48380 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX3P48380 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.19■□□□□ 0.82
RFX3P48380 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX3P48380 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.19■□□□□ 0.82
RFX3P48380 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX3P48380 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RFX3P48380 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFX3P48380 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX3P48380 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
RFX3P48380 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RFX3P48380 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX3P48380 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX3P48380 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
RFX3P48380 AC242852.2-201ENST00000615738 1807 ntBASIC20.18■□□□□ 0.82
RFX3P48380 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
RFX3P48380 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX3P48380 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX3P48380 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.18■□□□□ 0.82
RFX3P48380 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX3P48380 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.18■□□□□ 0.82
RFX3P48380 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.18■□□□□ 0.82
RFX3P48380 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX3P48380 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.18■□□□□ 0.82
RFX3P48380 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
RFX3P48380 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
RFX3P48380 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.18■□□□□ 0.82
RFX3P48380 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX3P48380 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.18■□□□□ 0.82
RFX3P48380 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFX3P48380 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX3P48380 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX3P48380 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFX3P48380 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.17■□□□□ 0.82
RFX3P48380 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.17■□□□□ 0.82
RFX3P48380 AC008764.7-201ENST00000593779 1081 ntBASIC20.17■□□□□ 0.82
RFX3P48380 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX3P48380 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX3P48380 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX3P48380 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFX3P48380 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFX3P48380 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.17■□□□□ 0.82
RFX3P48380 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
RFX3P48380 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX3P48380 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFX3P48380 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX3P48380 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
RFX3P48380 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
RFX3P48380 AC137767.1-201ENST00000602918 1920 ntBASIC20.16■□□□□ 0.82
RFX3P48380 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
RFX3P48380 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX3P48380 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.16■□□□□ 0.82
RFX3P48380 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.16■□□□□ 0.82
RFX3P48380 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX3P48380 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
RFX3P48380 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFX3P48380 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms