Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.96■□□□□ 0.95
COL5A1P20908 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL5A1P20908 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A1P20908 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A1P20908 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A1P20908 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.96■□□□□ 0.95
COL5A1P20908 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A1P20908 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.96■□□□□ 0.95
COL5A1P20908 AC010141.2-201ENST00000452426 721 ntBASIC20.96■□□□□ 0.95
COL5A1P20908 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
COL5A1P20908 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.96■□□□□ 0.95
COL5A1P20908 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.96■□□□□ 0.95
COL5A1P20908 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A1P20908 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.96■□□□□ 0.95
COL5A1P20908 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.96■□□□□ 0.95
COL5A1P20908 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
COL5A1P20908 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
COL5A1P20908 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.95
COL5A1P20908 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A1P20908 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A1P20908 AC138907.5-202ENST00000569484 235 ntBASIC20.95■□□□□ 0.94
COL5A1P20908 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.95■□□□□ 0.94
COL5A1P20908 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A1P20908 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A1P20908 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A1P20908 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A1P20908 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.95■□□□□ 0.94
COL5A1P20908 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
COL5A1P20908 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL5A1P20908 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.94■□□□□ 0.94
COL5A1P20908 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.94■□□□□ 0.94
COL5A1P20908 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A1P20908 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.94■□□□□ 0.94
COL5A1P20908 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A1P20908 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A1P20908 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.94■□□□□ 0.94
COL5A1P20908 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.94■□□□□ 0.94
COL5A1P20908 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL5A1P20908 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.94■□□□□ 0.94
COL5A1P20908 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.94■□□□□ 0.94
COL5A1P20908 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.93■□□□□ 0.94
COL5A1P20908 AC055733.4-201ENST00000638462 1354 ntBASIC20.93■□□□□ 0.94
COL5A1P20908 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A1P20908 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A1P20908 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
COL5A1P20908 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A1P20908 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A1P20908 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
COL5A1P20908 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
COL5A1P20908 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A1P20908 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
COL5A1P20908 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A1P20908 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL5A1P20908 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.92■□□□□ 0.94
COL5A1P20908 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.92■□□□□ 0.94
COL5A1P20908 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.92■□□□□ 0.94
COL5A1P20908 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.92■□□□□ 0.94
COL5A1P20908 AC013268.1-206ENST00000638368 961 ntBASIC20.92■□□□□ 0.94
COL5A1P20908 AC112229.1-201ENST00000639295 961 ntBASIC20.92■□□□□ 0.94
COL5A1P20908 AC092068.2-201ENST00000590491 1708 ntBASIC20.92■□□□□ 0.94
COL5A1P20908 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A1P20908 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A1P20908 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A1P20908 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
COL5A1P20908 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.92■□□□□ 0.94
COL5A1P20908 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
COL5A1P20908 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL5A1P20908 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL5A1P20908 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.92■□□□□ 0.94
COL5A1P20908 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL5A1P20908 AC010536.3-201ENST00000620306 533 ntBASIC20.92■□□□□ 0.94
COL5A1P20908 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.92■□□□□ 0.94
COL5A1P20908 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A1P20908 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.91■□□□□ 0.94
COL5A1P20908 AP001160.3-201ENST00000601484 763 ntBASIC20.91■□□□□ 0.94
COL5A1P20908 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
COL5A1P20908 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.91■□□□□ 0.94
COL5A1P20908 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A1P20908 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A1P20908 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.91■□□□□ 0.94
COL5A1P20908 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A1P20908 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A1P20908 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.91■□□□□ 0.94
COL5A1P20908 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL5A1P20908 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A1P20908 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A1P20908 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.9■□□□□ 0.94
COL5A1P20908 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A1P20908 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.9■□□□□ 0.94
COL5A1P20908 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A1P20908 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A1P20908 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A1P20908 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
COL5A1P20908 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A1P20908 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A1P20908 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
COL5A1P20908 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL5A1P20908 CYP2T1P-201ENST00000432607 1285 ntBASIC20.9■□□□□ 0.94
COL5A1P20908 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL5A1P20908 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.89■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 145.6 ms