Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCNAP12004 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.99■□□□□ 0.95
PCNAP12004 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.99■□□□□ 0.95
PCNAP12004 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.99■□□□□ 0.95
PCNAP12004 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.99■□□□□ 0.95
PCNAP12004 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.99■□□□□ 0.95
PCNAP12004 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCNAP12004 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.98■□□□□ 0.95
PCNAP12004 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCNAP12004 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCNAP12004 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCNAP12004 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
PCNAP12004 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCNAP12004 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.98■□□□□ 0.95
PCNAP12004 AL138724.1-201ENST00000606771 1088 ntBASIC20.98■□□□□ 0.95
PCNAP12004 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
PCNAP12004 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCNAP12004 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCNAP12004 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCNAP12004 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.98■□□□□ 0.95
PCNAP12004 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCNAP12004 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCNAP12004 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.97■□□□□ 0.95
PCNAP12004 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCNAP12004 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCNAP12004 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCNAP12004 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.97■□□□□ 0.95
PCNAP12004 AC092053.2-201ENST00000640557 1818 ntBASIC20.97■□□□□ 0.95
PCNAP12004 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
PCNAP12004 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCNAP12004 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCNAP12004 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.97■□□□□ 0.95
PCNAP12004 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCNAP12004 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.97■□□□□ 0.95
PCNAP12004 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
PCNAP12004 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCNAP12004 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCNAP12004 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCNAP12004 OR2I1P-207ENST00000453522 948 ntBASIC20.96■□□□□ 0.95
PCNAP12004 AC010525.1-201ENST00000585559 441 ntBASIC20.96■□□□□ 0.95
PCNAP12004 CA15P2-201ENST00000611168 834 ntBASIC20.96■□□□□ 0.95
PCNAP12004 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PCNAP12004 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCNAP12004 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PCNAP12004 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCNAP12004 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCNAP12004 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.95■□□□□ 0.94
PCNAP12004 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.95■□□□□ 0.94
PCNAP12004 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCNAP12004 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCNAP12004 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCNAP12004 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.95■□□□□ 0.94
PCNAP12004 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.95■□□□□ 0.94
PCNAP12004 AL031602.1-201ENST00000633169 911 ntBASIC20.95■□□□□ 0.94
PCNAP12004 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCNAP12004 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCNAP12004 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.94■□□□□ 0.94
PCNAP12004 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PCNAP12004 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.94■□□□□ 0.94
PCNAP12004 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
PCNAP12004 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.94■□□□□ 0.94
PCNAP12004 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.94■□□□□ 0.94
PCNAP12004 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.94■□□□□ 0.94
PCNAP12004 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.94■□□□□ 0.94
PCNAP12004 AC011298.3-201ENST00000615796 283 ntBASIC20.94■□□□□ 0.94
PCNAP12004 AC136469.2-201ENST00000623944 1028 ntBASIC20.94■□□□□ 0.94
PCNAP12004 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.94■□□□□ 0.94
PCNAP12004 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
PCNAP12004 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
PCNAP12004 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCNAP12004 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.93■□□□□ 0.94
PCNAP12004 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCNAP12004 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PCNAP12004 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCNAP12004 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCNAP12004 UNC93B3-201ENST00000308076 687 ntBASIC20.93■□□□□ 0.94
PCNAP12004 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCNAP12004 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCNAP12004 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCNAP12004 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PCNAP12004 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
PCNAP12004 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.93■□□□□ 0.94
PCNAP12004 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCNAP12004 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCNAP12004 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCNAP12004 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCNAP12004 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.93■□□□□ 0.94
PCNAP12004 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCNAP12004 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms