Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMS3P0CW19 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.22■□□□□ 0.67
LIMS3P0CW19 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMS3P0CW19 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMS3P0CW19 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMS3P0CW19 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMS3P0CW19 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMS3P0CW19 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMS3P0CW19 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMS3P0CW19 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
LIMS3P0CW19 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMS3P0CW19 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.21■□□□□ 0.67
LIMS3P0CW19 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
LIMS3P0CW19 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIMS3P0CW19 LINC01521-201ENST00000504184 1943 ntBASIC19.21■□□□□ 0.67
LIMS3P0CW19 AC026471.6-201ENST00000622954 1905 ntBASIC19.21■□□□□ 0.67
LIMS3P0CW19 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
LIMS3P0CW19 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMS3P0CW19 AC009102.2-201ENST00000606772 1639 ntBASIC19.21■□□□□ 0.67
LIMS3P0CW19 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.21■□□□□ 0.67
LIMS3P0CW19 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIMS3P0CW19 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMS3P0CW19 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
LIMS3P0CW19 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIMS3P0CW19 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LIMS3P0CW19 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.2■□□□□ 0.66
LIMS3P0CW19 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.2■□□□□ 0.66
LIMS3P0CW19 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
LIMS3P0CW19 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.2■□□□□ 0.66
LIMS3P0CW19 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMS3P0CW19 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMS3P0CW19 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIMS3P0CW19 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMS3P0CW19 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LIMS3P0CW19 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMS3P0CW19 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMS3P0CW19 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
LIMS3P0CW19 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
LIMS3P0CW19 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
LIMS3P0CW19 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMS3P0CW19 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.19■□□□□ 0.66
LIMS3P0CW19 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMS3P0CW19 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
LIMS3P0CW19 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMS3P0CW19 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMS3P0CW19 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMS3P0CW19 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMS3P0CW19 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMS3P0CW19 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMS3P0CW19 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMS3P0CW19 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.18■□□□□ 0.66
LIMS3P0CW19 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.18■□□□□ 0.66
LIMS3P0CW19 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.18■□□□□ 0.66
LIMS3P0CW19 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.18■□□□□ 0.66
LIMS3P0CW19 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.18■□□□□ 0.66
LIMS3P0CW19 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
LIMS3P0CW19 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIMS3P0CW19 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
LIMS3P0CW19 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMS3P0CW19 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMS3P0CW19 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMS3P0CW19 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMS3P0CW19 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.17■□□□□ 0.66
LIMS3P0CW19 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMS3P0CW19 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMS3P0CW19 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMS3P0CW19 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMS3P0CW19 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
LIMS3P0CW19 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMS3P0CW19 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMS3P0CW19 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMS3P0CW19 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMS3P0CW19 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMS3P0CW19 AC021242.3-201ENST00000607598 1377 ntBASIC19.17■□□□□ 0.66
LIMS3P0CW19 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMS3P0CW19 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMS3P0CW19 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
LIMS3P0CW19 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMS3P0CW19 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMS3P0CW19 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.16■□□□□ 0.66
LIMS3P0CW19 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
LIMS3P0CW19 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
LIMS3P0CW19 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMS3P0CW19 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMS3P0CW19 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
LIMS3P0CW19 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMS3P0CW19 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.16■□□□□ 0.66
LIMS3P0CW19 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.16■□□□□ 0.66
LIMS3P0CW19 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.15■□□□□ 0.66
LIMS3P0CW19 C17orf82-201ENST00000623772 1530 ntBASIC19.15■□□□□ 0.66
LIMS3P0CW19 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMS3P0CW19 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMS3P0CW19 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMS3P0CW19 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMS3P0CW19 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.15■□□□□ 0.66
LIMS3P0CW19 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMS3P0CW19 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.15■□□□□ 0.66
LIMS3P0CW19 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMS3P0CW19 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMS3P0CW19 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms