Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VIMP08670 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VIMP08670 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
VIMP08670 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VIMP08670 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VIMP08670 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.63■■□□□ 1.05
VIMP08670 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VIMP08670 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VIMP08670 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.63■■□□□ 1.05
VIMP08670 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VIMP08670 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.63■■□□□ 1.05
VIMP08670 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.63■■□□□ 1.05
VIMP08670 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VIMP08670 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VIMP08670 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VIMP08670 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VIMP08670 LINC01006-201ENST00000333319 2292 ntBASIC21.63■■□□□ 1.05
VIMP08670 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VIMP08670 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.63■■□□□ 1.05
VIMP08670 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
VIMP08670 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VIMP08670 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.62■■□□□ 1.05
VIMP08670 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.62■■□□□ 1.05
VIMP08670 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
VIMP08670 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.62■■□□□ 1.05
VIMP08670 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.62■■□□□ 1.05
VIMP08670 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VIMP08670 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VIMP08670 MIR6765-201ENST00000614092 87 ntBASIC21.62■■□□□ 1.05
VIMP08670 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VIMP08670 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VIMP08670 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
VIMP08670 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.62■■□□□ 1.05
VIMP08670 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VIMP08670 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VIMP08670 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VIMP08670 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VIMP08670 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.62■■□□□ 1.05
VIMP08670 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
VIMP08670 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
VIMP08670 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.61■■□□□ 1.05
VIMP08670 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.61■■□□□ 1.05
VIMP08670 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VIMP08670 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VIMP08670 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VIMP08670 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.6■■□□□ 1.05
VIMP08670 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.6■■□□□ 1.05
VIMP08670 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
VIMP08670 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VIMP08670 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
VIMP08670 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VIMP08670 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
VIMP08670 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
VIMP08670 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.6■■□□□ 1.05
VIMP08670 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VIMP08670 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VIMP08670 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VIMP08670 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VIMP08670 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
VIMP08670 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VIMP08670 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VIMP08670 GPX1-201ENST00000419349 1106 ntBASIC21.59■■□□□ 1.05
VIMP08670 AC004448.1-201ENST00000458332 883 ntBASIC21.59■■□□□ 1.05
VIMP08670 AL592293.1-201ENST00000502889 1188 ntBASIC21.59■■□□□ 1.05
VIMP08670 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VIMP08670 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.59■■□□□ 1.05
VIMP08670 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.59■■□□□ 1.05
VIMP08670 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VIMP08670 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VIMP08670 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VIMP08670 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VIMP08670 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VIMP08670 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VIMP08670 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VIMP08670 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VIMP08670 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VIMP08670 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
VIMP08670 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VIMP08670 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VIMP08670 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.58■■□□□ 1.05
VIMP08670 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VIMP08670 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
VIMP08670 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VIMP08670 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
VIMP08670 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.58■■□□□ 1.04
VIMP08670 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
VIMP08670 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.58■■□□□ 1.04
VIMP08670 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VIMP08670 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms