Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PROM1O43490 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PROM1O43490 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PROM1O43490 MIR939-201ENST00000401314 82 ntBASIC20.51■□□□□ 0.87
PROM1O43490 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.51■□□□□ 0.87
PROM1O43490 SUDS3P1-201ENST00000505831 966 ntBASIC20.51■□□□□ 0.87
PROM1O43490 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PROM1O43490 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.51■□□□□ 0.87
PROM1O43490 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PROM1O43490 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PROM1O43490 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
PROM1O43490 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PROM1O43490 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PROM1O43490 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PROM1O43490 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PROM1O43490 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.5■□□□□ 0.87
PROM1O43490 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.5■□□□□ 0.87
PROM1O43490 AF213884.3-201ENST00000563833 479 ntBASIC20.5■□□□□ 0.87
PROM1O43490 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PROM1O43490 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PROM1O43490 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.5■□□□□ 0.87
PROM1O43490 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PROM1O43490 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PROM1O43490 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.49■□□□□ 0.87
PROM1O43490 RASA4CP-201ENST00000424092 1398 ntBASIC20.49■□□□□ 0.87
PROM1O43490 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PROM1O43490 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PROM1O43490 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PROM1O43490 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PROM1O43490 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.49■□□□□ 0.87
PROM1O43490 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PROM1O43490 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PROM1O43490 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.48■□□□□ 0.87
PROM1O43490 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PROM1O43490 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.48■□□□□ 0.87
PROM1O43490 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PROM1O43490 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PROM1O43490 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PROM1O43490 AC091305.1-201ENST00000479476 895 ntBASIC20.48■□□□□ 0.87
PROM1O43490 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
PROM1O43490 AC005837.3-201ENST00000612163 286 ntBASIC20.48■□□□□ 0.87
PROM1O43490 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PROM1O43490 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PROM1O43490 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PROM1O43490 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.48■□□□□ 0.87
PROM1O43490 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PROM1O43490 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PROM1O43490 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PROM1O43490 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.47■□□□□ 0.87
PROM1O43490 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PROM1O43490 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.47■□□□□ 0.87
PROM1O43490 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PROM1O43490 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PROM1O43490 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PROM1O43490 IGHV3-19-201ENST00000521488 291 ntBASIC20.47■□□□□ 0.87
PROM1O43490 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.47■□□□□ 0.87
PROM1O43490 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PROM1O43490 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PROM1O43490 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
PROM1O43490 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PROM1O43490 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.46■□□□□ 0.87
PROM1O43490 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.46■□□□□ 0.87
PROM1O43490 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PROM1O43490 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PROM1O43490 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.46■□□□□ 0.87
PROM1O43490 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PROM1O43490 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PROM1O43490 OR7E47P-201ENST00000546390 1422 ntBASIC20.46■□□□□ 0.87
PROM1O43490 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.46■□□□□ 0.87
PROM1O43490 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
PROM1O43490 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PROM1O43490 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.46■□□□□ 0.87
PROM1O43490 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PROM1O43490 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.46■□□□□ 0.87
PROM1O43490 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
PROM1O43490 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PROM1O43490 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PROM1O43490 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PROM1O43490 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
PROM1O43490 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.87
PROM1O43490 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PROM1O43490 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
PROM1O43490 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PROM1O43490 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PROM1O43490 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PROM1O43490 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.45■□□□□ 0.86
PROM1O43490 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.45■□□□□ 0.86
PROM1O43490 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.45■□□□□ 0.86
PROM1O43490 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
PROM1O43490 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PROM1O43490 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PROM1O43490 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PROM1O43490 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.45■□□□□ 0.86
PROM1O43490 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PROM1O43490 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.45■□□□□ 0.86
PROM1O43490 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PROM1O43490 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PROM1O43490 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.44■□□□□ 0.86
PROM1O43490 AC142381.2-201ENST00000566120 298 ntBASIC20.44■□□□□ 0.86
PROM1O43490 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms