Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAV3A0A0B4J244 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRAV3A0A0B4J244 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.39■□□□□ 0.38
TRAV3A0A0B4J244 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV3A0A0B4J244 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.39■□□□□ 0.37
TRAV3A0A0B4J244 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC17.39■□□□□ 0.37
TRAV3A0A0B4J244 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC17.39■□□□□ 0.37
TRAV3A0A0B4J244 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC17.39■□□□□ 0.37
TRAV3A0A0B4J244 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC17.39■□□□□ 0.37
TRAV3A0A0B4J244 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV3A0A0B4J244 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC17.39■□□□□ 0.37
TRAV3A0A0B4J244 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV3A0A0B4J244 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV3A0A0B4J244 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 AC005229.4-201ENST00000610085 2198 ntBASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 GUSBP5-201ENST00000418136 578 ntBASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 AL356740.2-201ENST00000601559 647 ntBASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAV3A0A0B4J244 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 GATM-206ENST00000558336 1522 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 GRAMD4P7-201ENST00000578182 1232 ntBASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 AC244015.2-201ENST00000616358 1861 ntBASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 AC026471.6-201ENST00000622954 1905 ntBASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV3A0A0B4J244 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 AC079089.2-201ENST00000531211 1277 ntBASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 MIR3181-201ENST00000578512 73 ntBASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 MIR3621-201ENST00000580529 85 ntBASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
TRAV3A0A0B4J244 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 PALM-208ENST00000592155 2272 ntTSL 4 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 QDPR-206ENST00000508623 601 ntTSL 3 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms