Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXA2Q9Y261 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA2Q9Y261 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 AC010542.4-201ENST00000563151 1910 ntBASIC17.49■□□□□ 0.39
FOXA2Q9Y261 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA2Q9Y261 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 PKD1P6-201ENST00000343738 4769 ntBASIC17.48■□□□□ 0.39
FOXA2Q9Y261 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.48■□□□□ 0.39
FOXA2Q9Y261 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 AL499627.2-201ENST00000606283 725 ntBASIC17.47■□□□□ 0.39
FOXA2Q9Y261 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 SYT6-210ENST00000641643 1587 ntBASIC17.47■□□□□ 0.39
FOXA2Q9Y261 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXA2Q9Y261 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 AC006455.2-201ENST00000429931 906 ntBASIC17.46■□□□□ 0.39
FOXA2Q9Y261 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA2Q9Y261 FAM99A-202ENST00000538190 1989 ntBASIC17.46■□□□□ 0.39
FOXA2Q9Y261 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
FOXA2Q9Y261 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA2Q9Y261 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms