Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC034268.1-201ENST00000441047 882 ntBASIC20.58■□□□□ 0.89
SCN3AQ9NY46 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.58■□□□□ 0.89
SCN3AQ9NY46 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SCN3AQ9NY46 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCN3AQ9NY46 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SCN3AQ9NY46 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCN3AQ9NY46 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SCN3AQ9NY46 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.58■□□□□ 0.88
SCN3AQ9NY46 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SCN3AQ9NY46 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.57■□□□□ 0.88
SCN3AQ9NY46 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.57■□□□□ 0.88
SCN3AQ9NY46 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN3AQ9NY46 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN3AQ9NY46 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN3AQ9NY46 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN3AQ9NY46 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN3AQ9NY46 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN3AQ9NY46 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN3AQ9NY46 AL358852.1-201ENST00000623174 1268 ntBASIC20.56■□□□□ 0.88
SCN3AQ9NY46 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN3AQ9NY46 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN3AQ9NY46 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN3AQ9NY46 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN3AQ9NY46 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SCN3AQ9NY46 MIR935-201ENST00000401179 91 ntBASIC20.56■□□□□ 0.88
SCN3AQ9NY46 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN3AQ9NY46 AC079089.2-201ENST00000531211 1277 ntBASIC20.56■□□□□ 0.88
SCN3AQ9NY46 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCN3AQ9NY46 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCN3AQ9NY46 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
SCN3AQ9NY46 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 ESRRAP2-201ENST00000418437 1549 ntBASIC20.55■□□□□ 0.88
SCN3AQ9NY46 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 AC087623.3-201ENST00000607047 1098 ntBASIC20.55■□□□□ 0.88
SCN3AQ9NY46 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 GUSBP5-202ENST00000510805 1989 ntBASIC20.55■□□□□ 0.88
SCN3AQ9NY46 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN3AQ9NY46 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN3AQ9NY46 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCN3AQ9NY46 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.54■□□□□ 0.88
SCN3AQ9NY46 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN3AQ9NY46 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN3AQ9NY46 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN3AQ9NY46 OR7E47P-201ENST00000546390 1422 ntBASIC20.54■□□□□ 0.88
SCN3AQ9NY46 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SCN3AQ9NY46 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN3AQ9NY46 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.54■□□□□ 0.88
SCN3AQ9NY46 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN3AQ9NY46 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN3AQ9NY46 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCN3AQ9NY46 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCN3AQ9NY46 SMUG1P1-201ENST00000590640 811 ntBASIC20.53■□□□□ 0.88
SCN3AQ9NY46 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCN3AQ9NY46 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN3AQ9NY46 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCN3AQ9NY46 EP400NL-214ENST00000641289 2402 ntBASIC20.53■□□□□ 0.88
SCN3AQ9NY46 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SCN3AQ9NY46 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.53■□□□□ 0.88
SCN3AQ9NY46 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.53■□□□□ 0.88
SCN3AQ9NY46 MIR6084-201ENST00000622012 110 ntBASIC20.53■□□□□ 0.88
SCN3AQ9NY46 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SCN3AQ9NY46 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 AP004607.7-201ENST00000527152 1677 ntBASIC20.52■□□□□ 0.88
SCN3AQ9NY46 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN3AQ9NY46 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SCN3AQ9NY46 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
SCN3AQ9NY46 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
SCN3AQ9NY46 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 AL354811.1-201ENST00000610286 706 ntBASIC20.51■□□□□ 0.87
SCN3AQ9NY46 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms