Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CLN6Q9NWW5 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLN6Q9NWW5 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.73■□□□□ 0.75
CLN6Q9NWW5 AC010980.1-201ENST00000587192 1142 ntBASIC19.73■□□□□ 0.75
CLN6Q9NWW5 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CLN6Q9NWW5 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CLN6Q9NWW5 AC073130.3-201ENST00000624389 2278 ntBASIC19.73■□□□□ 0.75
CLN6Q9NWW5 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLN6Q9NWW5 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.73■□□□□ 0.75
CLN6Q9NWW5 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLN6Q9NWW5 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLN6Q9NWW5 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLN6Q9NWW5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 TSPY13P-201ENST00000338964 914 ntBASIC19.7■□□□□ 0.74
CLN6Q9NWW5 SNX5-217ENST00000606557 1087 ntBASIC19.7■□□□□ 0.74
CLN6Q9NWW5 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLN6Q9NWW5 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLN6Q9NWW5 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLN6Q9NWW5 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLN6Q9NWW5 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLN6Q9NWW5 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLN6Q9NWW5 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLN6Q9NWW5 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.69■□□□□ 0.74
CLN6Q9NWW5 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.69■□□□□ 0.74
CLN6Q9NWW5 MIR4508-201ENST00000584178 70 ntBASIC19.69■□□□□ 0.74
CLN6Q9NWW5 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLN6Q9NWW5 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.69■□□□□ 0.74
CLN6Q9NWW5 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLN6Q9NWW5 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 Z98882.1-201ENST00000622160 2253 ntBASIC19.68■□□□□ 0.74
CLN6Q9NWW5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CLN6Q9NWW5 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLN6Q9NWW5 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLN6Q9NWW5 CA15P2-201ENST00000611168 834 ntBASIC19.67■□□□□ 0.74
CLN6Q9NWW5 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.67■□□□□ 0.74
CLN6Q9NWW5 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.67■□□□□ 0.74
CLN6Q9NWW5 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.67■□□□□ 0.74
CLN6Q9NWW5 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.67■□□□□ 0.74
CLN6Q9NWW5 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLN6Q9NWW5 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLN6Q9NWW5 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLN6Q9NWW5 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLN6Q9NWW5 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLN6Q9NWW5 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLN6Q9NWW5 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLN6Q9NWW5 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLN6Q9NWW5 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLN6Q9NWW5 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLN6Q9NWW5 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLN6Q9NWW5 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLN6Q9NWW5 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLN6Q9NWW5 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLN6Q9NWW5 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms