Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX3Q99909 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.05■□□□□ 0.48
SSX3Q99909 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX3Q99909 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SSX3Q99909 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.05■□□□□ 0.48
SSX3Q99909 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX3Q99909 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX3Q99909 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX3Q99909 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX3Q99909 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SSX3Q99909 AL031432.3-201ENST00000607698 485 ntBASIC18.05■□□□□ 0.48
SSX3Q99909 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC18.05■□□□□ 0.48
SSX3Q99909 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX3Q99909 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SSX3Q99909 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSX3Q99909 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SSX3Q99909 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.04■□□□□ 0.48
SSX3Q99909 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SSX3Q99909 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.04■□□□□ 0.48
SSX3Q99909 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSX3Q99909 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSX3Q99909 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SSX3Q99909 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SSX3Q99909 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.04■□□□□ 0.48
SSX3Q99909 MIR3181-201ENST00000578512 73 ntBASIC18.04■□□□□ 0.48
SSX3Q99909 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.04■□□□□ 0.48
SSX3Q99909 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.04■□□□□ 0.48
SSX3Q99909 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SSX3Q99909 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SSX3Q99909 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX3Q99909 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.03■□□□□ 0.48
SSX3Q99909 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX3Q99909 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSX3Q99909 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX3Q99909 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX3Q99909 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
SSX3Q99909 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX3Q99909 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSX3Q99909 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.03■□□□□ 0.48
SSX3Q99909 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.03■□□□□ 0.48
SSX3Q99909 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.03■□□□□ 0.48
SSX3Q99909 pRNA.6-201ENST00000610482 90 ntBASIC18.03■□□□□ 0.48
SSX3Q99909 pRNA.5-201ENST00000612139 90 ntBASIC18.03■□□□□ 0.48
SSX3Q99909 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.03■□□□□ 0.48
SSX3Q99909 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.03■□□□□ 0.48
SSX3Q99909 pRNA.11-201ENST00000618423 90 ntBASIC18.03■□□□□ 0.48
SSX3Q99909 pRNA.13-201ENST00000619112 90 ntBASIC18.03■□□□□ 0.48
SSX3Q99909 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSX3Q99909 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX3Q99909 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SSX3Q99909 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SSX3Q99909 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSX3Q99909 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX3Q99909 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX3Q99909 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX3Q99909 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSX3Q99909 MIR935-201ENST00000401179 91 ntBASIC18.02■□□□□ 0.48
SSX3Q99909 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.02■□□□□ 0.48
SSX3Q99909 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.02■□□□□ 0.48
SSX3Q99909 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SSX3Q99909 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.02■□□□□ 0.48
SSX3Q99909 AF213884.3-201ENST00000563833 479 ntBASIC18.02■□□□□ 0.48
SSX3Q99909 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC18.02■□□□□ 0.48
SSX3Q99909 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC18.02■□□□□ 0.48
SSX3Q99909 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX3Q99909 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX3Q99909 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.01■□□□□ 0.47
SSX3Q99909 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX3Q99909 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.01■□□□□ 0.47
SSX3Q99909 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
SSX3Q99909 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.01■□□□□ 0.47
SSX3Q99909 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.01■□□□□ 0.47
SSX3Q99909 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.01■□□□□ 0.47
SSX3Q99909 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX3Q99909 AP001330.3-201ENST00000520123 633 ntBASIC18.01■□□□□ 0.47
SSX3Q99909 AC136469.2-201ENST00000623944 1028 ntBASIC18.01■□□□□ 0.47
SSX3Q99909 AL136967.2-201ENST00000623968 743 ntBASIC18.01■□□□□ 0.47
SSX3Q99909 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX3Q99909 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX3Q99909 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
SSX3Q99909 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SSX3Q99909 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SSX3Q99909 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX3Q99909 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SSX3Q99909 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX3Q99909 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SSX3Q99909 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18■□□□□ 0.47
SSX3Q99909 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SSX3Q99909 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18■□□□□ 0.47
SSX3Q99909 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SSX3Q99909 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18■□□□□ 0.47
SSX3Q99909 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SSX3Q99909 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SSX3Q99909 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18■□□□□ 0.47
SSX3Q99909 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18■□□□□ 0.47
SSX3Q99909 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SSX3Q99909 FP325331.1-202ENST00000623531 1380 ntBASIC18■□□□□ 0.47
SSX3Q99909 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SSX3Q99909 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
SSX3Q99909 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms