Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL12A1Q99715 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.22■□□□□ 0.67
COL12A1Q99715 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL12A1Q99715 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.22■□□□□ 0.67
COL12A1Q99715 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.22■□□□□ 0.67
COL12A1Q99715 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL12A1Q99715 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL12A1Q99715 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL12A1Q99715 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL12A1Q99715 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.21■□□□□ 0.67
COL12A1Q99715 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL12A1Q99715 Z99916.2-201ENST00000604037 246 ntBASIC19.21■□□□□ 0.67
COL12A1Q99715 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
COL12A1Q99715 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL12A1Q99715 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.21■□□□□ 0.66
COL12A1Q99715 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL12A1Q99715 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL12A1Q99715 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.2■□□□□ 0.66
COL12A1Q99715 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.2■□□□□ 0.66
COL12A1Q99715 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.2■□□□□ 0.66
COL12A1Q99715 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.2■□□□□ 0.66
COL12A1Q99715 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.2■□□□□ 0.66
COL12A1Q99715 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL12A1Q99715 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL12A1Q99715 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL12A1Q99715 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.2■□□□□ 0.66
COL12A1Q99715 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
COL12A1Q99715 AC010536.3-201ENST00000620306 533 ntBASIC19.2■□□□□ 0.66
COL12A1Q99715 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL12A1Q99715 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.2■□□□□ 0.66
COL12A1Q99715 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL12A1Q99715 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.19■□□□□ 0.66
COL12A1Q99715 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL12A1Q99715 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL12A1Q99715 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL12A1Q99715 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.19■□□□□ 0.66
COL12A1Q99715 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL12A1Q99715 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL12A1Q99715 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL12A1Q99715 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL12A1Q99715 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL12A1Q99715 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.19■□□□□ 0.66
COL12A1Q99715 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.19■□□□□ 0.66
COL12A1Q99715 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL12A1Q99715 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL12A1Q99715 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL12A1Q99715 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL12A1Q99715 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL12A1Q99715 MIR718-201ENST00000390190 70 ntBASIC19.19■□□□□ 0.66
COL12A1Q99715 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL12A1Q99715 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.19■□□□□ 0.66
COL12A1Q99715 REXO1L12P-201ENST00000622156 912 ntBASIC19.19■□□□□ 0.66
COL12A1Q99715 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL12A1Q99715 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL12A1Q99715 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.18■□□□□ 0.66
COL12A1Q99715 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.18■□□□□ 0.66
COL12A1Q99715 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL12A1Q99715 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.18■□□□□ 0.66
COL12A1Q99715 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL12A1Q99715 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL12A1Q99715 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.18■□□□□ 0.66
COL12A1Q99715 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL12A1Q99715 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
COL12A1Q99715 MIPEPP3-201ENST00000412105 444 ntBASIC19.17■□□□□ 0.66
COL12A1Q99715 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.17■□□□□ 0.66
COL12A1Q99715 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL12A1Q99715 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.17■□□□□ 0.66
COL12A1Q99715 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL12A1Q99715 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL12A1Q99715 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
COL12A1Q99715 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.16■□□□□ 0.66
COL12A1Q99715 LINC01529-204ENST00000636474 1715 ntBASIC19.16■□□□□ 0.66
COL12A1Q99715 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL12A1Q99715 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL12A1Q99715 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL12A1Q99715 AC068338.2-201ENST00000563278 1430 ntBASIC19.16■□□□□ 0.66
COL12A1Q99715 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.16■□□□□ 0.66
COL12A1Q99715 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.16■□□□□ 0.66
COL12A1Q99715 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.16■□□□□ 0.66
COL12A1Q99715 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL12A1Q99715 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.16■□□□□ 0.66
COL12A1Q99715 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL12A1Q99715 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.16■□□□□ 0.66
COL12A1Q99715 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
COL12A1Q99715 UBE2SP1-201ENST00000450587 669 ntBASIC19.16■□□□□ 0.66
COL12A1Q99715 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.16■□□□□ 0.66
COL12A1Q99715 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.16■□□□□ 0.66
COL12A1Q99715 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms