Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS35Q96QK1 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS35Q96QK1 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS35Q96QK1 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
VPS35Q96QK1 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
VPS35Q96QK1 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.5■■□□□ 1.03
VPS35Q96QK1 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.49■■□□□ 1.03
VPS35Q96QK1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.49■■□□□ 1.03
VPS35Q96QK1 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.49■■□□□ 1.03
VPS35Q96QK1 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.49■■□□□ 1.03
VPS35Q96QK1 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.49■■□□□ 1.03
VPS35Q96QK1 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.49■■□□□ 1.03
VPS35Q96QK1 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS35Q96QK1 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS35Q96QK1 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
VPS35Q96QK1 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS35Q96QK1 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.48■■□□□ 1.03
VPS35Q96QK1 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS35Q96QK1 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
VPS35Q96QK1 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS35Q96QK1 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.48■■□□□ 1.03
VPS35Q96QK1 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS35Q96QK1 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.48■■□□□ 1.03
VPS35Q96QK1 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
VPS35Q96QK1 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS35Q96QK1 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.48■■□□□ 1.03
VPS35Q96QK1 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.48■■□□□ 1.03
VPS35Q96QK1 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.48■■□□□ 1.03
VPS35Q96QK1 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS35Q96QK1 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS35Q96QK1 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS35Q96QK1 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS35Q96QK1 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS35Q96QK1 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
VPS35Q96QK1 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS35Q96QK1 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.47■■□□□ 1.03
VPS35Q96QK1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS35Q96QK1 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.47■■□□□ 1.03
VPS35Q96QK1 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS35Q96QK1 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS35Q96QK1 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.47■■□□□ 1.03
VPS35Q96QK1 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.47■■□□□ 1.03
VPS35Q96QK1 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS35Q96QK1 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS35Q96QK1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
VPS35Q96QK1 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS35Q96QK1 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS35Q96QK1 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.47■■□□□ 1.03
VPS35Q96QK1 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS35Q96QK1 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
VPS35Q96QK1 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS35Q96QK1 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS35Q96QK1 LINC00526-201ENST00000581067 1875 ntBASIC21.47■■□□□ 1.03
VPS35Q96QK1 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS35Q96QK1 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS35Q96QK1 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS35Q96QK1 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS35Q96QK1 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS35Q96QK1 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS35Q96QK1 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.46■■□□□ 1.03
VPS35Q96QK1 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
VPS35Q96QK1 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.46■■□□□ 1.03
VPS35Q96QK1 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.46■■□□□ 1.03
VPS35Q96QK1 AC139530.1-201ENST00000575312 1977 ntBASIC21.46■■□□□ 1.03
VPS35Q96QK1 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.46■■□□□ 1.03
VPS35Q96QK1 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS35Q96QK1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS35Q96QK1 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.46■■□□□ 1.03
VPS35Q96QK1 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS35Q96QK1 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.46■■□□□ 1.03
VPS35Q96QK1 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.03
VPS35Q96QK1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS35Q96QK1 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.45■■□□□ 1.02
VPS35Q96QK1 AC027612.3-201ENST00000413684 1047 ntBASIC21.45■■□□□ 1.02
VPS35Q96QK1 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.45■■□□□ 1.02
VPS35Q96QK1 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS35Q96QK1 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS35Q96QK1 OR7E47P-201ENST00000546390 1422 ntBASIC21.45■■□□□ 1.02
VPS35Q96QK1 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.45■■□□□ 1.02
VPS35Q96QK1 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS35Q96QK1 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VPS35Q96QK1 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS35Q96QK1 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.44■■□□□ 1.02
VPS35Q96QK1 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS35Q96QK1 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS35Q96QK1 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
VPS35Q96QK1 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS35Q96QK1 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms