Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 SLC29A4P1-201ENST00000398760 971 ntBASIC19.63■□□□□ 0.73
SNRNP40Q96DI7 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SNRNP40Q96DI7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.63■□□□□ 0.73
SNRNP40Q96DI7 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.63■□□□□ 0.73
SNRNP40Q96DI7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.63■□□□□ 0.73
SNRNP40Q96DI7 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SNRNP40Q96DI7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
SNRNP40Q96DI7 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.63■□□□□ 0.73
SNRNP40Q96DI7 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SNRNP40Q96DI7 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SNRNP40Q96DI7 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SNRNP40Q96DI7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.62■□□□□ 0.73
SNRNP40Q96DI7 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SNRNP40Q96DI7 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SNRNP40Q96DI7 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.61■□□□□ 0.73
SNRNP40Q96DI7 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SNRNP40Q96DI7 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.61■□□□□ 0.73
SNRNP40Q96DI7 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SNRNP40Q96DI7 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.61■□□□□ 0.73
SNRNP40Q96DI7 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.61■□□□□ 0.73
SNRNP40Q96DI7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SNRNP40Q96DI7 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 MYCNOS-205ENST00000641950 531 ntBASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SNRNP40Q96DI7 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SNRNP40Q96DI7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SNRNP40Q96DI7 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SNRNP40Q96DI7 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.59■□□□□ 0.73
SNRNP40Q96DI7 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.59■□□□□ 0.73
SNRNP40Q96DI7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.59■□□□□ 0.73
SNRNP40Q96DI7 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.59■□□□□ 0.73
SNRNP40Q96DI7 MIR4651-201ENST00000582622 73 ntBASIC19.59■□□□□ 0.73
SNRNP40Q96DI7 AP001160.3-201ENST00000601484 763 ntBASIC19.59■□□□□ 0.73
SNRNP40Q96DI7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SNRNP40Q96DI7 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SNRNP40Q96DI7 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.58■□□□□ 0.73
SNRNP40Q96DI7 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SNRNP40Q96DI7 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SNRNP40Q96DI7 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
SNRNP40Q96DI7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SNRNP40Q96DI7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SNRNP40Q96DI7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.58■□□□□ 0.72
SNRNP40Q96DI7 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SNRNP40Q96DI7 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 DUSP8P3-201ENST00000399571 1760 ntBASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 AC069152.1-201ENST00000438030 544 ntBASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 LINC00543-201ENST00000567234 1845 ntBASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.57■□□□□ 0.72
SNRNP40Q96DI7 AC004812.2-201ENST00000611079 2094 ntBASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 FAM201B-201ENST00000458407 597 ntBASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 AF201337.1-201ENST00000520239 748 ntBASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 AC133041.1-202ENST00000642053 222 ntBASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.56■□□□□ 0.72
SNRNP40Q96DI7 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SNRNP40Q96DI7 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SNRNP40Q96DI7 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.55■□□□□ 0.72
SNRNP40Q96DI7 LINC01124-201ENST00000409786 2117 ntBASIC19.55■□□□□ 0.72
SNRNP40Q96DI7 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SNRNP40Q96DI7 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SNRNP40Q96DI7 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SNRNP40Q96DI7 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SNRNP40Q96DI7 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms