Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDH11P55287 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CDH11P55287 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDH11P55287 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CDH11P55287 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.78■□□□□ 0.76
CDH11P55287 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDH11P55287 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CDH11P55287 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.78■□□□□ 0.76
CDH11P55287 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDH11P55287 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CDH11P55287 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.77■□□□□ 0.76
CDH11P55287 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.77■□□□□ 0.76
CDH11P55287 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.77■□□□□ 0.76
CDH11P55287 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDH11P55287 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDH11P55287 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CDH11P55287 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CDH11P55287 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CDH11P55287 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CDH11P55287 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.77■□□□□ 0.75
CDH11P55287 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CDH11P55287 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
CDH11P55287 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.76■□□□□ 0.75
CDH11P55287 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
CDH11P55287 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CDH11P55287 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.76■□□□□ 0.75
CDH11P55287 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDH11P55287 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDH11P55287 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDH11P55287 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.76■□□□□ 0.75
CDH11P55287 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CDH11P55287 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.76■□□□□ 0.75
CDH11P55287 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.76■□□□□ 0.75
CDH11P55287 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.76■□□□□ 0.75
CDH11P55287 LINC01529-204ENST00000636474 1715 ntBASIC19.76■□□□□ 0.75
CDH11P55287 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDH11P55287 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.76■□□□□ 0.75
CDH11P55287 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDH11P55287 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CDH11P55287 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDH11P55287 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.75■□□□□ 0.75
CDH11P55287 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CDH11P55287 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDH11P55287 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CDH11P55287 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CDH11P55287 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDH11P55287 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDH11P55287 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.75■□□□□ 0.75
CDH11P55287 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.75■□□□□ 0.75
CDH11P55287 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDH11P55287 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDH11P55287 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CDH11P55287 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.74■□□□□ 0.75
CDH11P55287 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.74■□□□□ 0.75
CDH11P55287 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.74■□□□□ 0.75
CDH11P55287 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDH11P55287 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CDH11P55287 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
CDH11P55287 FAM99A-202ENST00000538190 1989 ntBASIC19.74■□□□□ 0.75
CDH11P55287 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.73■□□□□ 0.75
CDH11P55287 AC026310.3-201ENST00000625186 2373 ntBASIC19.73■□□□□ 0.75
CDH11P55287 LINC01960-201ENST00000563759 1884 ntBASIC19.73■□□□□ 0.75
CDH11P55287 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.73■□□□□ 0.75
CDH11P55287 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDH11P55287 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH11P55287 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.73■□□□□ 0.75
CDH11P55287 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.73■□□□□ 0.75
CDH11P55287 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CDH11P55287 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDH11P55287 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CDH11P55287 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH11P55287 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH11P55287 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CDH11P55287 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CDH11P55287 AC010542.4-201ENST00000563151 1910 ntBASIC19.72■□□□□ 0.75
CDH11P55287 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.72■□□□□ 0.75
CDH11P55287 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH11P55287 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH11P55287 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDH11P55287 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.72■□□□□ 0.75
CDH11P55287 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.72■□□□□ 0.75
CDH11P55287 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
CDH11P55287 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDH11P55287 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDH11P55287 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.72■□□□□ 0.75
CDH11P55287 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH11P55287 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CDH11P55287 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH11P55287 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH11P55287 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CDH11P55287 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CDH11P55287 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH11P55287 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.71■□□□□ 0.75
CDH11P55287 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CDH11P55287 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.71■□□□□ 0.75
CDH11P55287 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.71■□□□□ 0.75
CDH11P55287 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CDH11P55287 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH11P55287 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.71■□□□□ 0.75
CDH11P55287 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms