Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC25.64■■□□□ 1.7
HMGB1P09429 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.64■■□□□ 1.7
HMGB1P09429 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
HMGB1P09429 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
HMGB1P09429 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
HMGB1P09429 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
HMGB1P09429 OR7E47P-201ENST00000546390 1422 ntBASIC25.63■■□□□ 1.69
HMGB1P09429 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
HMGB1P09429 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
HMGB1P09429 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
HMGB1P09429 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
HMGB1P09429 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC25.63■■□□□ 1.69
HMGB1P09429 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC25.63■■□□□ 1.69
HMGB1P09429 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC25.63■■□□□ 1.69
HMGB1P09429 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
HMGB1P09429 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
HMGB1P09429 AC233992.3-201ENST00000607491 485 ntBASIC25.63■■□□□ 1.69
HMGB1P09429 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC25.62■■□□□ 1.69
HMGB1P09429 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
HMGB1P09429 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.62■■□□□ 1.69
HMGB1P09429 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC25.62■■□□□ 1.69
HMGB1P09429 AC106739.1-201ENST00000617035 715 ntBASIC25.62■■□□□ 1.69
HMGB1P09429 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
HMGB1P09429 MYB-221ENST00000527615 2381 ntTSL 5 BASIC25.62■■□□□ 1.69
HMGB1P09429 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC25.62■■□□□ 1.69
HMGB1P09429 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC25.62■■□□□ 1.69
HMGB1P09429 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC25.61■■□□□ 1.69
HMGB1P09429 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
HMGB1P09429 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
HMGB1P09429 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
HMGB1P09429 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC25.61■■□□□ 1.69
HMGB1P09429 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
HMGB1P09429 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
HMGB1P09429 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC25.61■■□□□ 1.69
HMGB1P09429 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
HMGB1P09429 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC25.61■■□□□ 1.69
HMGB1P09429 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
HMGB1P09429 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
HMGB1P09429 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
HMGB1P09429 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
HMGB1P09429 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
HMGB1P09429 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
HMGB1P09429 PBX2P1-201ENST00000493219 1291 ntBASIC25.6■■□□□ 1.69
HMGB1P09429 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
HMGB1P09429 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
HMGB1P09429 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
HMGB1P09429 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
HMGB1P09429 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC25.59■■□□□ 1.69
HMGB1P09429 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
HMGB1P09429 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC25.59■■□□□ 1.69
HMGB1P09429 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
HMGB1P09429 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC25.59■■□□□ 1.69
HMGB1P09429 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC25.59■■□□□ 1.69
HMGB1P09429 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
HMGB1P09429 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
HMGB1P09429 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
HMGB1P09429 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
HMGB1P09429 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC25.59■■□□□ 1.69
HMGB1P09429 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
HMGB1P09429 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
HMGB1P09429 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
HMGB1P09429 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
HMGB1P09429 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
HMGB1P09429 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
HMGB1P09429 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
HMGB1P09429 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.58■■□□□ 1.69
HMGB1P09429 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
HMGB1P09429 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC25.58■■□□□ 1.69
HMGB1P09429 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
HMGB1P09429 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.58■■□□□ 1.69
HMGB1P09429 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
HMGB1P09429 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
HMGB1P09429 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
HMGB1P09429 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC25.58■■□□□ 1.68
HMGB1P09429 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC25.58■■□□□ 1.68
HMGB1P09429 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
HMGB1P09429 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
HMGB1P09429 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC25.58■■□□□ 1.68
HMGB1P09429 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
HMGB1P09429 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC25.57■■□□□ 1.68
HMGB1P09429 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
HMGB1P09429 EDA-201ENST00000338901 1233 ntBASIC25.57■■□□□ 1.68
HMGB1P09429 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC25.57■■□□□ 1.68
HMGB1P09429 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
HMGB1P09429 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC25.57■■□□□ 1.68
HMGB1P09429 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC25.57■■□□□ 1.68
HMGB1P09429 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC25.57■■□□□ 1.68
HMGB1P09429 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
HMGB1P09429 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC25.57■■□□□ 1.68
HMGB1P09429 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
HMGB1P09429 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
HMGB1P09429 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
HMGB1P09429 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
HMGB1P09429 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
HMGB1P09429 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
HMGB1P09429 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
HMGB1P09429 AC133561.4-201ENST00000566112 224 ntBASIC25.56■■□□□ 1.68
HMGB1P09429 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
HMGB1P09429 AC110285.6-201ENST00000617652 491 ntBASIC25.56■■□□□ 1.68
HMGB1P09429 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms