Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.21■□□□□ 0.99
VPS4BO75351 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.21■□□□□ 0.99
VPS4BO75351 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS4BO75351 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VPS4BO75351 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS4BO75351 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.2■□□□□ 0.99
VPS4BO75351 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
VPS4BO75351 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VPS4BO75351 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS4BO75351 FBXW4P1-201ENST00000426721 2239 ntBASIC21.2■□□□□ 0.98
VPS4BO75351 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.2■□□□□ 0.98
VPS4BO75351 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS4BO75351 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.2■□□□□ 0.98
VPS4BO75351 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS4BO75351 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS4BO75351 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS4BO75351 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS4BO75351 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS4BO75351 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
VPS4BO75351 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS4BO75351 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS4BO75351 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS4BO75351 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS4BO75351 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
VPS4BO75351 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
VPS4BO75351 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS4BO75351 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS4BO75351 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS4BO75351 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
VPS4BO75351 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
VPS4BO75351 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS4BO75351 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS4BO75351 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS4BO75351 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS4BO75351 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VPS4BO75351 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS4BO75351 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS4BO75351 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS4BO75351 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS4BO75351 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
VPS4BO75351 MIR6821-201ENST00000617625 74 ntBASIC21.18■□□□□ 0.98
VPS4BO75351 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
VPS4BO75351 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS4BO75351 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS4BO75351 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS4BO75351 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS4BO75351 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS4BO75351 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS4BO75351 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS4BO75351 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS4BO75351 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.17■□□□□ 0.98
VPS4BO75351 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS4BO75351 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.17■□□□□ 0.98
VPS4BO75351 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
VPS4BO75351 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.17■□□□□ 0.98
VPS4BO75351 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.17■□□□□ 0.98
VPS4BO75351 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.17■□□□□ 0.98
VPS4BO75351 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
VPS4BO75351 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS4BO75351 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.17■□□□□ 0.98
VPS4BO75351 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS4BO75351 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS4BO75351 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS4BO75351 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS4BO75351 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS4BO75351 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.16■□□□□ 0.98
VPS4BO75351 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
VPS4BO75351 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
VPS4BO75351 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS4BO75351 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.16■□□□□ 0.98
VPS4BO75351 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
VPS4BO75351 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS4BO75351 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS4BO75351 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS4BO75351 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS4BO75351 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
VPS4BO75351 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
VPS4BO75351 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
VPS4BO75351 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS4BO75351 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS4BO75351 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.15■□□□□ 0.98
VPS4BO75351 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS4BO75351 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS4BO75351 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS4BO75351 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS4BO75351 AF213884.3-201ENST00000563833 479 ntBASIC21.15■□□□□ 0.98
VPS4BO75351 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
VPS4BO75351 AL136967.2-201ENST00000623968 743 ntBASIC21.15■□□□□ 0.98
VPS4BO75351 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS4BO75351 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS4BO75351 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.15■□□□□ 0.98
VPS4BO75351 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS4BO75351 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.14■□□□□ 0.98
VPS4BO75351 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.14■□□□□ 0.97
VPS4BO75351 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.14■□□□□ 0.97
VPS4BO75351 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
VPS4BO75351 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
VPS4BO75351 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS4BO75351 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS4BO75351 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms