Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SGCEO43556 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SGCEO43556 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SGCEO43556 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SGCEO43556 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SGCEO43556 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SGCEO43556 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.08■□□□□ 0.65
SGCEO43556 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.08■□□□□ 0.65
SGCEO43556 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
SGCEO43556 AC137767.1-201ENST00000602918 1920 ntBASIC19.08■□□□□ 0.65
SGCEO43556 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
SGCEO43556 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.08■□□□□ 0.65
SGCEO43556 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
SGCEO43556 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SGCEO43556 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
SGCEO43556 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SGCEO43556 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
SGCEO43556 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SGCEO43556 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SGCEO43556 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SGCEO43556 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.07■□□□□ 0.64
SGCEO43556 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.07■□□□□ 0.64
SGCEO43556 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
SGCEO43556 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.07■□□□□ 0.64
SGCEO43556 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.07■□□□□ 0.64
SGCEO43556 AC068587.7-201ENST00000641602 218 ntBASIC19.07■□□□□ 0.64
SGCEO43556 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SGCEO43556 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SGCEO43556 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 AC139530.1-201ENST00000575312 1977 ntBASIC19.06■□□□□ 0.64
SGCEO43556 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.06■□□□□ 0.64
SGCEO43556 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.06■□□□□ 0.64
SGCEO43556 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.06■□□□□ 0.64
SGCEO43556 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.06■□□□□ 0.64
SGCEO43556 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 UNC93B3-201ENST00000308076 687 ntBASIC19.06■□□□□ 0.64
SGCEO43556 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.06■□□□□ 0.64
SGCEO43556 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
SGCEO43556 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.06■□□□□ 0.64
SGCEO43556 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.06■□□□□ 0.64
SGCEO43556 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.06■□□□□ 0.64
SGCEO43556 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SGCEO43556 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
SGCEO43556 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.06■□□□□ 0.64
SGCEO43556 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SGCEO43556 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SGCEO43556 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.05■□□□□ 0.64
SGCEO43556 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.05■□□□□ 0.64
SGCEO43556 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
SGCEO43556 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.05■□□□□ 0.64
SGCEO43556 AC092053.2-201ENST00000640557 1818 ntBASIC19.05■□□□□ 0.64
SGCEO43556 AC010525.1-201ENST00000585559 441 ntBASIC19.05■□□□□ 0.64
SGCEO43556 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.05■□□□□ 0.64
SGCEO43556 AC087239.1-201ENST00000622671 572 ntBASIC19.05■□□□□ 0.64
SGCEO43556 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.05■□□□□ 0.64
SGCEO43556 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SGCEO43556 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SGCEO43556 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SGCEO43556 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.05■□□□□ 0.64
SGCEO43556 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
SGCEO43556 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SGCEO43556 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SGCEO43556 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SGCEO43556 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SGCEO43556 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SGCEO43556 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SGCEO43556 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SGCEO43556 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SGCEO43556 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SGCEO43556 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SGCEO43556 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.04■□□□□ 0.64
SGCEO43556 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
SGCEO43556 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SGCEO43556 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SGCEO43556 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms