Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HMGB3O15347 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC17.46■□□□□ 0.39
HMGB3O15347 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
HMGB3O15347 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 PALM-208ENST00000592155 2272 ntTSL 4 BASIC17.46■□□□□ 0.39
HMGB3O15347 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HMGB3O15347 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.38
HMGB3O15347 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
HMGB3O15347 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
HMGB3O15347 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC17.45■□□□□ 0.38
HMGB3O15347 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
HMGB3O15347 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB3O15347 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGB3O15347 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 AC073130.3-201ENST00000624389 2278 ntBASIC17.45■□□□□ 0.38
HMGB3O15347 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB3O15347 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
HMGB3O15347 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB3O15347 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB3O15347 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HMGB3O15347 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HMGB3O15347 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HMGB3O15347 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGB3O15347 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGB3O15347 GFER-205ENST00000569451 517 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGB3O15347 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB3O15347 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HMGB3O15347 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.44■□□□□ 0.38
HMGB3O15347 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
HMGB3O15347 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB3O15347 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGB3O15347 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGB3O15347 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB3O15347 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB3O15347 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB3O15347 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB3O15347 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB3O15347 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB3O15347 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC17.43■□□□□ 0.38
HMGB3O15347 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB3O15347 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
HMGB3O15347 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGB3O15347 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
HMGB3O15347 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB3O15347 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGB3O15347 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB3O15347 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB3O15347 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGB3O15347 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
HMGB3O15347 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB3O15347 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB3O15347 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HMGB3O15347 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB3O15347 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB3O15347 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB3O15347 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB3O15347 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
HMGB3O15347 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HMGB3O15347 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB3O15347 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB3O15347 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB3O15347 AC005229.4-201ENST00000610085 2198 ntBASIC17.42■□□□□ 0.38
HMGB3O15347 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB3O15347 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HMGB3O15347 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB3O15347 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB3O15347 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HMGB3O15347 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HMGB3O15347 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms