Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM1O00151 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
PDLIM1O00151 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
PDLIM1O00151 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
PDLIM1O00151 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM1O00151 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM1O00151 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM1O00151 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.55■□□□□ 0.88
PDLIM1O00151 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.55■□□□□ 0.88
PDLIM1O00151 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM1O00151 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
PDLIM1O00151 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM1O00151 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.54■□□□□ 0.88
PDLIM1O00151 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.54■□□□□ 0.88
PDLIM1O00151 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
PDLIM1O00151 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM1O00151 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.54■□□□□ 0.88
PDLIM1O00151 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM1O00151 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM1O00151 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM1O00151 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM1O00151 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM1O00151 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.54■□□□□ 0.88
PDLIM1O00151 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
PDLIM1O00151 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
PDLIM1O00151 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM1O00151 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM1O00151 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
PDLIM1O00151 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM1O00151 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.53■□□□□ 0.88
PDLIM1O00151 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM1O00151 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM1O00151 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.53■□□□□ 0.88
PDLIM1O00151 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PDLIM1O00151 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDLIM1O00151 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
PDLIM1O00151 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDLIM1O00151 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PDLIM1O00151 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.52■□□□□ 0.88
PDLIM1O00151 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
PDLIM1O00151 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDLIM1O00151 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDLIM1O00151 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM1O00151 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM1O00151 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.51■□□□□ 0.87
PDLIM1O00151 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.51■□□□□ 0.87
PDLIM1O00151 AF131216.4-201ENST00000638924 1588 ntBASIC20.51■□□□□ 0.87
PDLIM1O00151 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM1O00151 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM1O00151 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PDLIM1O00151 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.51■□□□□ 0.87
PDLIM1O00151 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.51■□□□□ 0.87
PDLIM1O00151 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.51■□□□□ 0.87
PDLIM1O00151 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM1O00151 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.51■□□□□ 0.87
PDLIM1O00151 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM1O00151 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM1O00151 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM1O00151 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM1O00151 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM1O00151 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM1O00151 AC021242.3-201ENST00000607598 1377 ntBASIC20.5■□□□□ 0.87
PDLIM1O00151 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM1O00151 BX664725.1-201ENST00000438252 379 ntBASIC20.5■□□□□ 0.87
PDLIM1O00151 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.5■□□□□ 0.87
PDLIM1O00151 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
PDLIM1O00151 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM1O00151 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDLIM1O00151 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
PDLIM1O00151 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDLIM1O00151 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDLIM1O00151 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDLIM1O00151 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDLIM1O00151 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.49■□□□□ 0.87
PDLIM1O00151 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
PDLIM1O00151 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDLIM1O00151 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PDLIM1O00151 AC239859.2-201ENST00000444165 318 ntBASIC20.49■□□□□ 0.87
PDLIM1O00151 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.49■□□□□ 0.87
PDLIM1O00151 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.49■□□□□ 0.87
PDLIM1O00151 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
PDLIM1O00151 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.49■□□□□ 0.87
PDLIM1O00151 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDLIM1O00151 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
PDLIM1O00151 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
PDLIM1O00151 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.48■□□□□ 0.87
PDLIM1O00151 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
PDLIM1O00151 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PDLIM1O00151 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
PDLIM1O00151 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDLIM1O00151 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PDLIM1O00151 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM1O00151 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM1O00151 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM1O00151 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM1O00151 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM1O00151 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM1O00151 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
PDLIM1O00151 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM1O00151 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms