Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.7■■□□□ 1.07
TRIM49D1C9J1S8 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM49D1C9J1S8 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.7■■□□□ 1.06
TRIM49D1C9J1S8 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM49D1C9J1S8 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.7■■□□□ 1.06
TRIM49D1C9J1S8 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM49D1C9J1S8 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM49D1C9J1S8 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM49D1C9J1S8 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM49D1C9J1S8 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.69■■□□□ 1.06
TRIM49D1C9J1S8 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM49D1C9J1S8 KRT125P-201ENST00000546827 989 ntBASIC21.69■■□□□ 1.06
TRIM49D1C9J1S8 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM49D1C9J1S8 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.69■■□□□ 1.06
TRIM49D1C9J1S8 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM49D1C9J1S8 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM49D1C9J1S8 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.67■■□□□ 1.06
TRIM49D1C9J1S8 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 AL499627.2-201ENST00000606283 725 ntBASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM49D1C9J1S8 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 Z92544.1-202ENST00000571933 1220 ntBASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 MIR4787-201ENST00000607364 84 ntBASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 Z98882.1-201ENST00000622160 2253 ntBASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.65■■□□□ 1.06
TRIM49D1C9J1S8 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TRIM49D1C9J1S8 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRIM49D1C9J1S8 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TRIM49D1C9J1S8 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRIM49D1C9J1S8 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.64■■□□□ 1.06
TRIM49D1C9J1S8 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRIM49D1C9J1S8 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM49D1C9J1S8 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.64■■□□□ 1.05
TRIM49D1C9J1S8 AC010997.5-201ENST00000609182 354 ntBASIC21.64■■□□□ 1.05
TRIM49D1C9J1S8 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
TRIM49D1C9J1S8 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM49D1C9J1S8 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM49D1C9J1S8 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM49D1C9J1S8 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM49D1C9J1S8 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.63■■□□□ 1.05
TRIM49D1C9J1S8 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM49D1C9J1S8 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms