Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
NDE1Q9NXR1 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NDE1Q9NXR1 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NDE1Q9NXR1 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NDE1Q9NXR1 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
NDE1Q9NXR1 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.99■□□□□ 0.95
NDE1Q9NXR1 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NDE1Q9NXR1 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NDE1Q9NXR1 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.99■□□□□ 0.95
NDE1Q9NXR1 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NDE1Q9NXR1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NDE1Q9NXR1 AL157384.1-201ENST00000445995 2473 ntBASIC20.98■□□□□ 0.95
NDE1Q9NXR1 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NDE1Q9NXR1 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NDE1Q9NXR1 DUX4L9-201ENST00000449051 1259 ntBASIC20.98■□□□□ 0.95
NDE1Q9NXR1 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NDE1Q9NXR1 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.98■□□□□ 0.95
NDE1Q9NXR1 MIR7108-201ENST00000614319 87 ntBASIC20.98■□□□□ 0.95
NDE1Q9NXR1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.98■□□□□ 0.95
NDE1Q9NXR1 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
NDE1Q9NXR1 LINC01960-201ENST00000563759 1884 ntBASIC20.98■□□□□ 0.95
NDE1Q9NXR1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NDE1Q9NXR1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NDE1Q9NXR1 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.95■□□□□ 0.95
NDE1Q9NXR1 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 AC019171.1-201ENST00000601251 1056 ntBASIC20.95■□□□□ 0.94
NDE1Q9NXR1 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.95■□□□□ 0.94
NDE1Q9NXR1 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.94■□□□□ 0.94
NDE1Q9NXR1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NDE1Q9NXR1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NDE1Q9NXR1 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
NDE1Q9NXR1 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
NDE1Q9NXR1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NDE1Q9NXR1 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.94■□□□□ 0.94
NDE1Q9NXR1 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
NDE1Q9NXR1 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.93■□□□□ 0.94
NDE1Q9NXR1 LINC01529-204ENST00000636474 1715 ntBASIC20.92■□□□□ 0.94
NDE1Q9NXR1 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.92■□□□□ 0.94
NDE1Q9NXR1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NDE1Q9NXR1 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
NDE1Q9NXR1 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NDE1Q9NXR1 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms