Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SMCO4Q9NRQ5 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 RPS2-209ENST00000529806 993 ntTSL 3 BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMCO4Q9NRQ5 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.12■□□□□ 0.33
SMCO4Q9NRQ5 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMCO4Q9NRQ5 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.11■□□□□ 0.33
SMCO4Q9NRQ5 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMCO4Q9NRQ5 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMCO4Q9NRQ5 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMCO4Q9NRQ5 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMCO4Q9NRQ5 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SMCO4Q9NRQ5 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMCO4Q9NRQ5 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMCO4Q9NRQ5 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 LETM1P2-201ENST00000597330 2178 ntBASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.1■□□□□ 0.33
SMCO4Q9NRQ5 FEM1AP1-201ENST00000431297 1995 ntBASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
SMCO4Q9NRQ5 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMCO4Q9NRQ5 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.08■□□□□ 0.33
SMCO4Q9NRQ5 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
SMCO4Q9NRQ5 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMCO4Q9NRQ5 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMCO4Q9NRQ5 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMCO4Q9NRQ5 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SMCO4Q9NRQ5 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.08■□□□□ 0.33
SMCO4Q9NRQ5 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO4Q9NRQ5 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO4Q9NRQ5 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO4Q9NRQ5 RPS2-210ENST00000530225 765 ntTSL 2 BASIC17.08■□□□□ 0.32
SMCO4Q9NRQ5 CALM3-209ENST00000597743 577 ntTSL 4 BASIC17.08■□□□□ 0.32
SMCO4Q9NRQ5 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO4Q9NRQ5 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO4Q9NRQ5 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms