Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.82■■□□□ 1.08
VPS13AQ96RL7 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS13AQ96RL7 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.81■■□□□ 1.08
VPS13AQ96RL7 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.81■■□□□ 1.08
VPS13AQ96RL7 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.81■■□□□ 1.08
VPS13AQ96RL7 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS13AQ96RL7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.81■■□□□ 1.08
VPS13AQ96RL7 AC142086.6-201ENST00000621154 1765 ntBASIC21.81■■□□□ 1.08
VPS13AQ96RL7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
VPS13AQ96RL7 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VPS13AQ96RL7 AC022211.4-201ENST00000625094 2161 ntBASIC21.81■■□□□ 1.08
VPS13AQ96RL7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.81■■□□□ 1.08
VPS13AQ96RL7 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13AQ96RL7 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 MIR4758-201ENST00000577688 71 ntBASIC21.79■■□□□ 1.08
VPS13AQ96RL7 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
VPS13AQ96RL7 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS13AQ96RL7 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS13AQ96RL7 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS13AQ96RL7 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS13AQ96RL7 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS13AQ96RL7 AC010331.1-201ENST00000611423 582 ntBASIC21.78■■□□□ 1.08
VPS13AQ96RL7 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS13AQ96RL7 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
VPS13AQ96RL7 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS13AQ96RL7 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
VPS13AQ96RL7 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS13AQ96RL7 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS13AQ96RL7 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
VPS13AQ96RL7 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
VPS13AQ96RL7 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.77■■□□□ 1.08
VPS13AQ96RL7 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.77■■□□□ 1.08
VPS13AQ96RL7 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS13AQ96RL7 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
VPS13AQ96RL7 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.77■■□□□ 1.07
VPS13AQ96RL7 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.77■■□□□ 1.07
VPS13AQ96RL7 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.77■■□□□ 1.07
VPS13AQ96RL7 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS13AQ96RL7 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS13AQ96RL7 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.76■■□□□ 1.07
VPS13AQ96RL7 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.76■■□□□ 1.07
VPS13AQ96RL7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.76■■□□□ 1.07
VPS13AQ96RL7 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
VPS13AQ96RL7 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.76■■□□□ 1.07
VPS13AQ96RL7 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS13AQ96RL7 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS13AQ96RL7 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS13AQ96RL7 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS13AQ96RL7 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS13AQ96RL7 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
VPS13AQ96RL7 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS13AQ96RL7 AL445228.2-201ENST00000605589 952 ntBASIC21.75■■□□□ 1.07
VPS13AQ96RL7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.75■■□□□ 1.07
VPS13AQ96RL7 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
VPS13AQ96RL7 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13AQ96RL7 ESRRAP1-201ENST00000400596 1257 ntBASIC21.74■■□□□ 1.07
VPS13AQ96RL7 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13AQ96RL7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13AQ96RL7 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13AQ96RL7 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13AQ96RL7 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13AQ96RL7 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
VPS13AQ96RL7 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13AQ96RL7 MYC-209ENST00000641252 345 ntBASIC21.74■■□□□ 1.07
VPS13AQ96RL7 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13AQ96RL7 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13AQ96RL7 LINC01529-204ENST00000636474 1715 ntBASIC21.74■■□□□ 1.07
VPS13AQ96RL7 AC004687.1-201ENST00000579003 1625 ntBASIC21.73■■□□□ 1.07
VPS13AQ96RL7 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms