Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NR1H4Q96RI1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
NR1H4Q96RI1 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.46■□□□□ 0.87
NR1H4Q96RI1 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
NR1H4Q96RI1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NR1H4Q96RI1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.46■□□□□ 0.87
NR1H4Q96RI1 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.46■□□□□ 0.87
NR1H4Q96RI1 Z98882.1-201ENST00000622160 2253 ntBASIC20.46■□□□□ 0.87
NR1H4Q96RI1 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.46■□□□□ 0.87
NR1H4Q96RI1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.45■□□□□ 0.87
NR1H4Q96RI1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 MIR7108-201ENST00000614319 87 ntBASIC20.45■□□□□ 0.86
NR1H4Q96RI1 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
NR1H4Q96RI1 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NR1H4Q96RI1 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 ALDH1A3-203ENST00000557963 1670 ntBASIC20.43■□□□□ 0.86
NR1H4Q96RI1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 AL020996.1-203ENST00000536896 2307 ntBASIC20.43■□□□□ 0.86
NR1H4Q96RI1 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NR1H4Q96RI1 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 FEM1AP1-201ENST00000431297 1995 ntBASIC20.42■□□□□ 0.86
NR1H4Q96RI1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NR1H4Q96RI1 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
NR1H4Q96RI1 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NR1H4Q96RI1 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NR1H4Q96RI1 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NR1H4Q96RI1 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NR1H4Q96RI1 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
NR1H4Q96RI1 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
NR1H4Q96RI1 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.4■□□□□ 0.86
NR1H4Q96RI1 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.4■□□□□ 0.86
NR1H4Q96RI1 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.4■□□□□ 0.86
NR1H4Q96RI1 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
NR1H4Q96RI1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.39■□□□□ 0.86
NR1H4Q96RI1 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
NR1H4Q96RI1 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
NR1H4Q96RI1 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
NR1H4Q96RI1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
NR1H4Q96RI1 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NR1H4Q96RI1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NR1H4Q96RI1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms