Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.49■□□□□ 0.87
PTCHD1Q96NR3 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
PTCHD1Q96NR3 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD1Q96NR3 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD1Q96NR3 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.49■□□□□ 0.87
PTCHD1Q96NR3 MIR935-201ENST00000401179 91 ntBASIC20.49■□□□□ 0.87
PTCHD1Q96NR3 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.49■□□□□ 0.87
PTCHD1Q96NR3 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD1Q96NR3 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD1Q96NR3 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
PTCHD1Q96NR3 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD1Q96NR3 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
PTCHD1Q96NR3 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.48■□□□□ 0.87
PTCHD1Q96NR3 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.48■□□□□ 0.87
PTCHD1Q96NR3 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD1Q96NR3 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.48■□□□□ 0.87
PTCHD1Q96NR3 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.48■□□□□ 0.87
PTCHD1Q96NR3 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
PTCHD1Q96NR3 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.48■□□□□ 0.87
PTCHD1Q96NR3 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD1Q96NR3 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD1Q96NR3 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD1Q96NR3 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
PTCHD1Q96NR3 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD1Q96NR3 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD1Q96NR3 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD1Q96NR3 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD1Q96NR3 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD1Q96NR3 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD1Q96NR3 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD1Q96NR3 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD1Q96NR3 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 OXCT2P1-201ENST00000447263 1535 ntBASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.46■□□□□ 0.87
PTCHD1Q96NR3 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 AC105233.4-201ENST00000642045 216 ntBASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.45■□□□□ 0.86
PTCHD1Q96NR3 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 AL358852.1-201ENST00000623174 1268 ntBASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD1Q96NR3 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTCHD1Q96NR3 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTCHD1Q96NR3 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTCHD1Q96NR3 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTCHD1Q96NR3 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTCHD1Q96NR3 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PTCHD1Q96NR3 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
PTCHD1Q96NR3 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
PTCHD1Q96NR3 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms