Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 AC087239.1-201ENST00000622671 572 ntBASIC16.87■□□□□ 0.29
CCDC140Q96MF4 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 STK25-234ENST00000535007 2459 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 AC092053.2-201ENST00000640557 1818 ntBASIC16.86■□□□□ 0.29
CCDC140Q96MF4 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC140Q96MF4 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 AC010141.3-201ENST00000456659 717 ntBASIC16.85■□□□□ 0.29
CCDC140Q96MF4 AP005435.1-201ENST00000529293 1178 ntBASIC16.85■□□□□ 0.29
CCDC140Q96MF4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC140Q96MF4 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 AC079089.2-201ENST00000531211 1277 ntBASIC16.84■□□□□ 0.29
CCDC140Q96MF4 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 AC233992.3-201ENST00000607491 485 ntBASIC16.84■□□□□ 0.29
CCDC140Q96MF4 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC140Q96MF4 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 EDA-201ENST00000338901 1233 ntBASIC16.83■□□□□ 0.28
CCDC140Q96MF4 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 AP001330.3-201ENST00000520123 633 ntBASIC16.83■□□□□ 0.28
CCDC140Q96MF4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 GRAMD4P4-201ENST00000613563 1115 ntBASIC16.83■□□□□ 0.28
CCDC140Q96MF4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CCDC140Q96MF4 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC140Q96MF4 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC140Q96MF4 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC140Q96MF4 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC140Q96MF4 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC140Q96MF4 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC140Q96MF4 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC140Q96MF4 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CCDC140Q96MF4 AC008764.7-201ENST00000593779 1081 ntBASIC16.82■□□□□ 0.28
CCDC140Q96MF4 AL139246.5-201ENST00000606645 996 ntBASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms