Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
SKA3Q8IX90 AL031602.1-201ENST00000633169 911 ntBASIC19.19■□□□□ 0.66
SKA3Q8IX90 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.19■□□□□ 0.66
SKA3Q8IX90 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SKA3Q8IX90 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.19■□□□□ 0.66
SKA3Q8IX90 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SKA3Q8IX90 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA3Q8IX90 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SKA3Q8IX90 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA3Q8IX90 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
SKA3Q8IX90 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA3Q8IX90 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SKA3Q8IX90 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SKA3Q8IX90 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SKA3Q8IX90 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.18■□□□□ 0.66
SKA3Q8IX90 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA3Q8IX90 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA3Q8IX90 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.18■□□□□ 0.66
SKA3Q8IX90 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SKA3Q8IX90 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA3Q8IX90 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA3Q8IX90 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA3Q8IX90 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA3Q8IX90 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA3Q8IX90 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA3Q8IX90 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA3Q8IX90 EDA-201ENST00000338901 1233 ntBASIC19.17■□□□□ 0.66
SKA3Q8IX90 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.17■□□□□ 0.66
SKA3Q8IX90 BX842568.3-201ENST00000418104 571 ntBASIC19.17■□□□□ 0.66
SKA3Q8IX90 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.17■□□□□ 0.66
SKA3Q8IX90 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.17■□□□□ 0.66
SKA3Q8IX90 AC233992.3-201ENST00000607491 485 ntBASIC19.17■□□□□ 0.66
SKA3Q8IX90 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA3Q8IX90 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SKA3Q8IX90 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA3Q8IX90 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SKA3Q8IX90 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA3Q8IX90 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SKA3Q8IX90 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA3Q8IX90 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SKA3Q8IX90 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA3Q8IX90 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA3Q8IX90 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA3Q8IX90 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.16■□□□□ 0.66
SKA3Q8IX90 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SKA3Q8IX90 AC008764.7-201ENST00000593779 1081 ntBASIC19.16■□□□□ 0.66
SKA3Q8IX90 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.16■□□□□ 0.66
SKA3Q8IX90 AL355001.2-201ENST00000620617 1191 ntBASIC19.16■□□□□ 0.66
SKA3Q8IX90 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA3Q8IX90 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SKA3Q8IX90 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.16■□□□□ 0.66
SKA3Q8IX90 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SKA3Q8IX90 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA3Q8IX90 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.15■□□□□ 0.66
SKA3Q8IX90 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA3Q8IX90 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA3Q8IX90 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SKA3Q8IX90 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA3Q8IX90 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SKA3Q8IX90 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SKA3Q8IX90 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.15■□□□□ 0.66
SKA3Q8IX90 AC133561.4-201ENST00000566112 224 ntBASIC19.15■□□□□ 0.66
SKA3Q8IX90 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.15■□□□□ 0.66
SKA3Q8IX90 AL031432.3-201ENST00000607698 485 ntBASIC19.15■□□□□ 0.66
SKA3Q8IX90 AC068587.7-201ENST00000641602 218 ntBASIC19.15■□□□□ 0.66
SKA3Q8IX90 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA3Q8IX90 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA3Q8IX90 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA3Q8IX90 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SKA3Q8IX90 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SKA3Q8IX90 AC127496.7-201ENST00000625110 1798 ntBASIC19.14■□□□□ 0.66
SKA3Q8IX90 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SKA3Q8IX90 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SKA3Q8IX90 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.14■□□□□ 0.65
SKA3Q8IX90 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SKA3Q8IX90 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.14■□□□□ 0.65
SKA3Q8IX90 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.14■□□□□ 0.65
SKA3Q8IX90 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.14■□□□□ 0.65
SKA3Q8IX90 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.14■□□□□ 0.65
SKA3Q8IX90 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SKA3Q8IX90 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SKA3Q8IX90 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.14■□□□□ 0.65
SKA3Q8IX90 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.14■□□□□ 0.65
SKA3Q8IX90 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
SKA3Q8IX90 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SKA3Q8IX90 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA3Q8IX90 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA3Q8IX90 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA3Q8IX90 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA3Q8IX90 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA3Q8IX90 AP001330.3-201ENST00000520123 633 ntBASIC19.13■□□□□ 0.65
SKA3Q8IX90 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.13■□□□□ 0.65
SKA3Q8IX90 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SKA3Q8IX90 CA15P2-201ENST00000611168 834 ntBASIC19.13■□□□□ 0.65
SKA3Q8IX90 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SKA3Q8IX90 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA3Q8IX90 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms