Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VRK3Q8IV63 AC139530.1-201ENST00000575312 1977 ntBASIC21.34■■□□□ 1.01
VRK3Q8IV63 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VRK3Q8IV63 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VRK3Q8IV63 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VRK3Q8IV63 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
VRK3Q8IV63 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VRK3Q8IV63 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VRK3Q8IV63 AC010141.3-201ENST00000456659 717 ntBASIC21.33■■□□□ 1.01
VRK3Q8IV63 AC091305.1-201ENST00000479476 895 ntBASIC21.33■■□□□ 1.01
VRK3Q8IV63 AC142381.2-201ENST00000566120 298 ntBASIC21.33■■□□□ 1.01
VRK3Q8IV63 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VRK3Q8IV63 RASA4CP-201ENST00000424092 1398 ntBASIC21.33■■□□□ 1
VRK3Q8IV63 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VRK3Q8IV63 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VRK3Q8IV63 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
VRK3Q8IV63 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.32■■□□□ 1
VRK3Q8IV63 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.32■■□□□ 1
VRK3Q8IV63 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VRK3Q8IV63 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.32■■□□□ 1
VRK3Q8IV63 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VRK3Q8IV63 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.32■■□□□ 1
VRK3Q8IV63 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.32■■□□□ 1
VRK3Q8IV63 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.32■■□□□ 1
VRK3Q8IV63 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VRK3Q8IV63 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VRK3Q8IV63 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
VRK3Q8IV63 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VRK3Q8IV63 AC242852.2-201ENST00000615738 1807 ntBASIC21.32■■□□□ 1
VRK3Q8IV63 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
VRK3Q8IV63 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.31■■□□□ 1
VRK3Q8IV63 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.31■■□□□ 1
VRK3Q8IV63 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VRK3Q8IV63 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.31■■□□□ 1
VRK3Q8IV63 LINC00526-201ENST00000581067 1875 ntBASIC21.31■■□□□ 1
VRK3Q8IV63 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.31■■□□□ 1
VRK3Q8IV63 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.31■■□□□ 1
VRK3Q8IV63 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.31■■□□□ 1
VRK3Q8IV63 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.31■■□□□ 1
VRK3Q8IV63 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.31■■□□□ 1
VRK3Q8IV63 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
VRK3Q8IV63 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.31■■□□□ 1
VRK3Q8IV63 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VRK3Q8IV63 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VRK3Q8IV63 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.3■■□□□ 1
VRK3Q8IV63 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.3■■□□□ 1
VRK3Q8IV63 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VRK3Q8IV63 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
VRK3Q8IV63 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.3■■□□□ 1
VRK3Q8IV63 IGHV3-19-201ENST00000521488 291 ntBASIC21.3■■□□□ 1
VRK3Q8IV63 AC079089.2-201ENST00000531211 1277 ntBASIC21.3■■□□□ 1
VRK3Q8IV63 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.3■■□□□ 1
VRK3Q8IV63 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.3■■□□□ 1
VRK3Q8IV63 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
VRK3Q8IV63 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VRK3Q8IV63 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
VRK3Q8IV63 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VRK3Q8IV63 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VRK3Q8IV63 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.3■■□□□ 1
VRK3Q8IV63 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.29■■□□□ 1
VRK3Q8IV63 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.29■■□□□ 1
VRK3Q8IV63 ECEL1P1-201ENST00000373592 1742 ntBASIC21.29■■□□□ 1
VRK3Q8IV63 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.29■■□□□ 1
VRK3Q8IV63 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.29■■□□□ 1
VRK3Q8IV63 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VRK3Q8IV63 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.29■■□□□ 1
VRK3Q8IV63 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.29■■□□□ 1
VRK3Q8IV63 AC087239.1-201ENST00000622671 572 ntBASIC21.29■■□□□ 1
VRK3Q8IV63 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.29■■□□□ 1
VRK3Q8IV63 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.29■■□□□ 1
VRK3Q8IV63 OXCT2P1-201ENST00000447263 1535 ntBASIC21.29■■□□□ 1
VRK3Q8IV63 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VRK3Q8IV63 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.29■■□□□ 1
VRK3Q8IV63 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.29■■□□□ 1
VRK3Q8IV63 TSPY26P-201ENST00000476365 1326 ntBASIC21.29■■□□□ 1
VRK3Q8IV63 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.28■■□□□ 1
VRK3Q8IV63 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VRK3Q8IV63 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VRK3Q8IV63 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.28■■□□□ 1
VRK3Q8IV63 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.28■■□□□ 1
VRK3Q8IV63 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VRK3Q8IV63 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.28■■□□□ 1
VRK3Q8IV63 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.28■■□□□ 1
VRK3Q8IV63 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.28■■□□□ 1
VRK3Q8IV63 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
VRK3Q8IV63 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.28■■□□□ 1
VRK3Q8IV63 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VRK3Q8IV63 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VRK3Q8IV63 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.27■■□□□ 1
VRK3Q8IV63 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.27■■□□□ 1
VRK3Q8IV63 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VRK3Q8IV63 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VRK3Q8IV63 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.27■■□□□ 1
VRK3Q8IV63 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.27■■□□□ 1
VRK3Q8IV63 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.27■■□□□ 1
VRK3Q8IV63 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
VRK3Q8IV63 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
VRK3Q8IV63 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VRK3Q8IV63 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms