Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC27.8■■■□□ 2.04
RC3H1Q5TC82 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC27.8■■■□□ 2.04
RC3H1Q5TC82 DUSP8P3-201ENST00000399571 1760 ntBASIC27.79■■■□□ 2.04
RC3H1Q5TC82 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC27.79■■■□□ 2.04
RC3H1Q5TC82 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
RC3H1Q5TC82 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC27.79■■■□□ 2.04
RC3H1Q5TC82 AC073210.2-201ENST00000430369 194 ntBASIC27.79■■■□□ 2.04
RC3H1Q5TC82 RGMA-211ENST00000557420 989 ntTSL 3 BASIC27.79■■■□□ 2.04
RC3H1Q5TC82 AP001160.3-201ENST00000601484 763 ntBASIC27.79■■■□□ 2.04
RC3H1Q5TC82 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC27.79■■■□□ 2.04
RC3H1Q5TC82 LINC00543-201ENST00000567234 1845 ntBASIC27.78■■■□□ 2.04
RC3H1Q5TC82 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC27.78■■■□□ 2.04
RC3H1Q5TC82 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
RC3H1Q5TC82 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
RC3H1Q5TC82 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
RC3H1Q5TC82 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
RC3H1Q5TC82 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
RC3H1Q5TC82 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
RC3H1Q5TC82 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC27.77■■■□□ 2.04
RC3H1Q5TC82 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
RC3H1Q5TC82 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC27.77■■■□□ 2.04
RC3H1Q5TC82 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC27.77■■■□□ 2.04
RC3H1Q5TC82 AC069152.1-201ENST00000438030 544 ntBASIC27.77■■■□□ 2.04
RC3H1Q5TC82 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC27.77■■■□□ 2.04
RC3H1Q5TC82 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC27.77■■■□□ 2.04
RC3H1Q5TC82 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC27.77■■■□□ 2.04
RC3H1Q5TC82 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
RC3H1Q5TC82 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC27.77■■■□□ 2.04
RC3H1Q5TC82 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC27.77■■■□□ 2.04
RC3H1Q5TC82 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
RC3H1Q5TC82 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC27.76■■■□□ 2.04
RC3H1Q5TC82 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC27.76■■■□□ 2.04
RC3H1Q5TC82 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC27.76■■■□□ 2.04
RC3H1Q5TC82 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC27.76■■■□□ 2.03
RC3H1Q5TC82 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
RC3H1Q5TC82 SLC29A4P1-201ENST00000398760 971 ntBASIC27.76■■■□□ 2.03
RC3H1Q5TC82 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC27.76■■■□□ 2.03
RC3H1Q5TC82 BRI3-207ENST00000539286 699 ntTSL 2 BASIC27.76■■■□□ 2.03
RC3H1Q5TC82 PFKL-212ENST00000628044 129 ntTSL 3 BASIC27.76■■■□□ 2.03
RC3H1Q5TC82 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.03
RC3H1Q5TC82 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
RC3H1Q5TC82 CNN2P6-201ENST00000439038 900 ntBASIC27.75■■■□□ 2.03
RC3H1Q5TC82 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
RC3H1Q5TC82 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC27.75■■■□□ 2.03
RC3H1Q5TC82 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
RC3H1Q5TC82 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC27.75■■■□□ 2.03
RC3H1Q5TC82 MFF-207ENST00000409565 1548 ntTSL 2 BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 AC133552.2-202ENST00000575694 574 ntBASIC27.74■■■□□ 2.03
RC3H1Q5TC82 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
RC3H1Q5TC82 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
RC3H1Q5TC82 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
RC3H1Q5TC82 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
RC3H1Q5TC82 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC27.73■■■□□ 2.03
RC3H1Q5TC82 MIR4651-201ENST00000582622 73 ntBASIC27.73■■■□□ 2.03
RC3H1Q5TC82 AC133041.1-202ENST00000642053 222 ntBASIC27.73■■■□□ 2.03
RC3H1Q5TC82 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC27.73■■■□□ 2.03
RC3H1Q5TC82 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
RC3H1Q5TC82 H19-210ENST00000439725 1929 ntTSL 2 BASIC27.73■■■□□ 2.03
RC3H1Q5TC82 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
RC3H1Q5TC82 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
RC3H1Q5TC82 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC27.72■■■□□ 2.03
RC3H1Q5TC82 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC27.72■■■□□ 2.03
RC3H1Q5TC82 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC27.72■■■□□ 2.03
RC3H1Q5TC82 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC27.72■■■□□ 2.03
RC3H1Q5TC82 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC27.72■■■□□ 2.03
RC3H1Q5TC82 AL139125.2-201ENST00000623134 1869 ntBASIC27.72■■■□□ 2.03
RC3H1Q5TC82 AC055733.4-201ENST00000638462 1354 ntBASIC27.72■■■□□ 2.03
RC3H1Q5TC82 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
RC3H1Q5TC82 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC27.71■■■□□ 2.03
RC3H1Q5TC82 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC27.71■■■□□ 2.03
RC3H1Q5TC82 AF201337.1-201ENST00000520239 748 ntBASIC27.71■■■□□ 2.03
RC3H1Q5TC82 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
RC3H1Q5TC82 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC27.71■■■□□ 2.03
RC3H1Q5TC82 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
RC3H1Q5TC82 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
RC3H1Q5TC82 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
RC3H1Q5TC82 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
RC3H1Q5TC82 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC27.7■■■□□ 2.02
RC3H1Q5TC82 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC27.7■■■□□ 2.02
RC3H1Q5TC82 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
RC3H1Q5TC82 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
RC3H1Q5TC82 PXK-203ENST00000383715 1756 ntTSL 5 BASIC27.7■■■□□ 2.02
RC3H1Q5TC82 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
RC3H1Q5TC82 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
RC3H1Q5TC82 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
RC3H1Q5TC82 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC27.69■■■□□ 2.02
RC3H1Q5TC82 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
RC3H1Q5TC82 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC27.69■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms