Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.69■□□□□ 0.74
RNFT1Q5M7Z0 AC145350.3-201ENST00000569033 163 ntBASIC19.69■□□□□ 0.74
RNFT1Q5M7Z0 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNFT1Q5M7Z0 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNFT1Q5M7Z0 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNFT1Q5M7Z0 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
RNFT1Q5M7Z0 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.68■□□□□ 0.74
RNFT1Q5M7Z0 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNFT1Q5M7Z0 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNFT1Q5M7Z0 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RNFT1Q5M7Z0 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.67■□□□□ 0.74
RNFT1Q5M7Z0 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RNFT1Q5M7Z0 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RNFT1Q5M7Z0 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNFT1Q5M7Z0 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNFT1Q5M7Z0 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
RNFT1Q5M7Z0 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.67■□□□□ 0.74
RNFT1Q5M7Z0 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 AC080038.1-201ENST00000611274 1154 ntBASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RNFT1Q5M7Z0 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 AC016769.1-201ENST00000409132 1010 ntBASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNFT1Q5M7Z0 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RNFT1Q5M7Z0 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RNFT1Q5M7Z0 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
RNFT1Q5M7Z0 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.64■□□□□ 0.74
RNFT1Q5M7Z0 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 LINC01960-201ENST00000563759 1884 ntBASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNFT1Q5M7Z0 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 AC079140.4-201ENST00000507448 529 ntBASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNFT1Q5M7Z0 AC005224.4-201ENST00000583262 1652 ntBASIC19.62■□□□□ 0.73
RNFT1Q5M7Z0 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNFT1Q5M7Z0 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.62■□□□□ 0.73
RNFT1Q5M7Z0 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNFT1Q5M7Z0 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.62■□□□□ 0.73
RNFT1Q5M7Z0 CDCA4P2-201ENST00000441182 718 ntBASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms