Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 AC092171.4-201ENST00000609130 632 ntBASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC40Q4G0X9 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CCDC40Q4G0X9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
CCDC40Q4G0X9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.89■■□□□ 1.41
CCDC40Q4G0X9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
CCDC40Q4G0X9 MIR3181-201ENST00000578512 73 ntBASIC23.89■■□□□ 1.41
CCDC40Q4G0X9 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.89■■□□□ 1.41
CCDC40Q4G0X9 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC40Q4G0X9 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
CCDC40Q4G0X9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC40Q4G0X9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC40Q4G0X9 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC40Q4G0X9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
CCDC40Q4G0X9 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC23.86■■□□□ 1.41
CCDC40Q4G0X9 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC40Q4G0X9 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
CCDC40Q4G0X9 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC40Q4G0X9 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC23.86■■□□□ 1.41
CCDC40Q4G0X9 MIR4466-201ENST00000606121 54 ntBASIC23.86■■□□□ 1.41
CCDC40Q4G0X9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
CCDC40Q4G0X9 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC40Q4G0X9 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC40Q4G0X9 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.85■■□□□ 1.41
CCDC40Q4G0X9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.84■■□□□ 1.41
CCDC40Q4G0X9 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
CCDC40Q4G0X9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.41
CCDC40Q4G0X9 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms