Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PCDH1Q08174 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDH1Q08174 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.99■□□□□ 0.95
PCDH1Q08174 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.99■□□□□ 0.95
PCDH1Q08174 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.99■□□□□ 0.95
PCDH1Q08174 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDH1Q08174 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PCDH1Q08174 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
PCDH1Q08174 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.99■□□□□ 0.95
PCDH1Q08174 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PCDH1Q08174 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.99■□□□□ 0.95
PCDH1Q08174 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDH1Q08174 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PCDH1Q08174 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PCDH1Q08174 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.98■□□□□ 0.95
PCDH1Q08174 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.98■□□□□ 0.95
PCDH1Q08174 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH1Q08174 AL136116.3-201ENST00000402907 1138 ntBASIC20.98■□□□□ 0.95
PCDH1Q08174 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH1Q08174 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.98■□□□□ 0.95
PCDH1Q08174 C11orf96-202ENST00000528572 1834 ntBASIC20.98■□□□□ 0.95
PCDH1Q08174 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH1Q08174 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH1Q08174 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.98■□□□□ 0.95
PCDH1Q08174 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
PCDH1Q08174 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH1Q08174 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH1Q08174 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.97■□□□□ 0.95
PCDH1Q08174 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH1Q08174 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
PCDH1Q08174 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.97■□□□□ 0.95
PCDH1Q08174 AP005435.1-201ENST00000529293 1178 ntBASIC20.97■□□□□ 0.95
PCDH1Q08174 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDH1Q08174 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH1Q08174 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH1Q08174 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
PCDH1Q08174 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH1Q08174 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
PCDH1Q08174 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH1Q08174 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH1Q08174 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.96■□□□□ 0.95
PCDH1Q08174 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH1Q08174 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH1Q08174 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
PCDH1Q08174 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.96■□□□□ 0.95
PCDH1Q08174 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
PCDH1Q08174 AC010525.1-201ENST00000585559 441 ntBASIC20.96■□□□□ 0.95
PCDH1Q08174 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.96■□□□□ 0.95
PCDH1Q08174 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
PCDH1Q08174 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH1Q08174 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH1Q08174 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.96■□□□□ 0.95
PCDH1Q08174 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH1Q08174 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
PCDH1Q08174 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH1Q08174 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH1Q08174 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH1Q08174 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH1Q08174 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH1Q08174 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
PCDH1Q08174 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH1Q08174 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH1Q08174 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH1Q08174 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDH1Q08174 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH1Q08174 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH1Q08174 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
PCDH1Q08174 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH1Q08174 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH1Q08174 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH1Q08174 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH1Q08174 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH1Q08174 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH1Q08174 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDH1Q08174 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH1Q08174 AC010141.3-201ENST00000456659 717 ntBASIC20.94■□□□□ 0.94
PCDH1Q08174 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDH1Q08174 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH1Q08174 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH1Q08174 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.94■□□□□ 0.94
PCDH1Q08174 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH1Q08174 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH1Q08174 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH1Q08174 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.93■□□□□ 0.94
PCDH1Q08174 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH1Q08174 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
PCDH1Q08174 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH1Q08174 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH1Q08174 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.93■□□□□ 0.94
PCDH1Q08174 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH1Q08174 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.93■□□□□ 0.94
PCDH1Q08174 AC087239.1-201ENST00000622671 572 ntBASIC20.93■□□□□ 0.94
PCDH1Q08174 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PCDH1Q08174 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH1Q08174 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH1Q08174 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH1Q08174 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH1Q08174 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
PCDH1Q08174 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH1Q08174 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms