Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.29■□□□□ 0.84
PDGFAP04085 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PDGFAP04085 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
PDGFAP04085 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
PDGFAP04085 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDGFAP04085 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDGFAP04085 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDGFAP04085 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.28■□□□□ 0.84
PDGFAP04085 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.28■□□□□ 0.84
PDGFAP04085 AC104771.1-201ENST00000603335 964 ntBASIC20.28■□□□□ 0.84
PDGFAP04085 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.28■□□□□ 0.84
PDGFAP04085 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PDGFAP04085 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDGFAP04085 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDGFAP04085 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDGFAP04085 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.28■□□□□ 0.84
PDGFAP04085 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
PDGFAP04085 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
PDGFAP04085 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.27■□□□□ 0.84
PDGFAP04085 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PDGFAP04085 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PDGFAP04085 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.27■□□□□ 0.84
PDGFAP04085 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
PDGFAP04085 AP003733.4-201ENST00000623785 1697 ntBASIC20.27■□□□□ 0.84
PDGFAP04085 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
PDGFAP04085 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
PDGFAP04085 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PDGFAP04085 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.27■□□□□ 0.84
PDGFAP04085 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PDGFAP04085 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.27■□□□□ 0.84
PDGFAP04085 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.27■□□□□ 0.83
PDGFAP04085 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
PDGFAP04085 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PDGFAP04085 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PDGFAP04085 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PDGFAP04085 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDGFAP04085 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDGFAP04085 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDGFAP04085 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
PDGFAP04085 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.26■□□□□ 0.83
PDGFAP04085 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDGFAP04085 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDGFAP04085 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDGFAP04085 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDGFAP04085 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDGFAP04085 AC026185.1-201ENST00000445748 174 ntBASIC20.26■□□□□ 0.83
PDGFAP04085 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.26■□□□□ 0.83
PDGFAP04085 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.26■□□□□ 0.83
PDGFAP04085 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.26■□□□□ 0.83
PDGFAP04085 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDGFAP04085 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.26■□□□□ 0.83
PDGFAP04085 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDGFAP04085 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDGFAP04085 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDGFAP04085 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PDGFAP04085 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDGFAP04085 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PDGFAP04085 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PDGFAP04085 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.25■□□□□ 0.83
PDGFAP04085 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.25■□□□□ 0.83
PDGFAP04085 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.25■□□□□ 0.83
PDGFAP04085 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.25■□□□□ 0.83
PDGFAP04085 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PDGFAP04085 CROCCP5-201ENST00000436658 830 ntBASIC20.25■□□□□ 0.83
PDGFAP04085 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.25■□□□□ 0.83
PDGFAP04085 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDGFAP04085 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
PDGFAP04085 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDGFAP04085 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.25■□□□□ 0.83
PDGFAP04085 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
PDGFAP04085 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDGFAP04085 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDGFAP04085 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDGFAP04085 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
PDGFAP04085 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDGFAP04085 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.24■□□□□ 0.83
PDGFAP04085 BID-214ENST00000617586 542 ntTSL 5 BASIC20.24■□□□□ 0.83
PDGFAP04085 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDGFAP04085 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDGFAP04085 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDGFAP04085 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDGFAP04085 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
PDGFAP04085 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDGFAP04085 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PDGFAP04085 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PDGFAP04085 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.23■□□□□ 0.83
PDGFAP04085 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
PDGFAP04085 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.23■□□□□ 0.83
PDGFAP04085 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDGFAP04085 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PDGFAP04085 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PDGFAP04085 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDGFAP04085 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDGFAP04085 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDGFAP04085 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.22■□□□□ 0.83
PDGFAP04085 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDGFAP04085 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PDGFAP04085 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.22■□□□□ 0.83
PDGFAP04085 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDGFAP04085 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms