Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
RAF1P04049 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RAF1P04049 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RAF1P04049 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RAF1P04049 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
RAF1P04049 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.59■□□□□ 0.73
RAF1P04049 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.59■□□□□ 0.73
RAF1P04049 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.59■□□□□ 0.73
RAF1P04049 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RAF1P04049 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
RAF1P04049 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.59■□□□□ 0.73
RAF1P04049 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
RAF1P04049 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RAF1P04049 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.59■□□□□ 0.73
RAF1P04049 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.59■□□□□ 0.73
RAF1P04049 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RAF1P04049 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RAF1P04049 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
RAF1P04049 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
RAF1P04049 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
RAF1P04049 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
RAF1P04049 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.58■□□□□ 0.73
RAF1P04049 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
RAF1P04049 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.58■□□□□ 0.73
RAF1P04049 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
RAF1P04049 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
RAF1P04049 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
RAF1P04049 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.58■□□□□ 0.72
RAF1P04049 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.58■□□□□ 0.72
RAF1P04049 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.58■□□□□ 0.72
RAF1P04049 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RAF1P04049 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.57■□□□□ 0.72
RAF1P04049 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
RAF1P04049 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RAF1P04049 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RAF1P04049 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.57■□□□□ 0.72
RAF1P04049 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
RAF1P04049 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
RAF1P04049 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
RAF1P04049 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
RAF1P04049 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
RAF1P04049 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.57■□□□□ 0.72
RAF1P04049 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RAF1P04049 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RAF1P04049 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RAF1P04049 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.56■□□□□ 0.72
RAF1P04049 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RAF1P04049 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.56■□□□□ 0.72
RAF1P04049 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RAF1P04049 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RAF1P04049 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RAF1P04049 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.56■□□□□ 0.72
RAF1P04049 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
RAF1P04049 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RAF1P04049 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.56■□□□□ 0.72
RAF1P04049 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.56■□□□□ 0.72
RAF1P04049 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RAF1P04049 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RAF1P04049 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RAF1P04049 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
RAF1P04049 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.55■□□□□ 0.72
RAF1P04049 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RAF1P04049 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RAF1P04049 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RAF1P04049 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RAF1P04049 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RAF1P04049 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.55■□□□□ 0.72
RAF1P04049 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RAF1P04049 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.55■□□□□ 0.72
RAF1P04049 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.54■□□□□ 0.72
RAF1P04049 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.54■□□□□ 0.72
RAF1P04049 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.54■□□□□ 0.72
RAF1P04049 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.54■□□□□ 0.72
RAF1P04049 AC136469.2-201ENST00000623944 1028 ntBASIC19.54■□□□□ 0.72
RAF1P04049 AC241377.3-202ENST00000626088 1088 ntBASIC19.54■□□□□ 0.72
RAF1P04049 AC241585.3-202ENST00000628937 1088 ntBASIC19.54■□□□□ 0.72
RAF1P04049 AC245100.8-202ENST00000629247 1058 ntBASIC19.54■□□□□ 0.72
RAF1P04049 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
RAF1P04049 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RAF1P04049 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RAF1P04049 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RAF1P04049 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RAF1P04049 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
RAF1P04049 AC079630.1-202ENST00000618127 1840 ntBASIC19.53■□□□□ 0.72
RAF1P04049 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RAF1P04049 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.53■□□□□ 0.72
RAF1P04049 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RAF1P04049 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.53■□□□□ 0.72
RAF1P04049 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms