Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC137767.1-201ENST00000602918 1920 ntBASIC20.49■□□□□ 0.87
LDB3O75112 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB3O75112 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDB3O75112 AC080038.3-201ENST00000623346 1952 ntBASIC20.48■□□□□ 0.87
LDB3O75112 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
LDB3O75112 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDB3O75112 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
LDB3O75112 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDB3O75112 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
LDB3O75112 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.48■□□□□ 0.87
LDB3O75112 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.48■□□□□ 0.87
LDB3O75112 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.48■□□□□ 0.87
LDB3O75112 IGHV3-19-201ENST00000521488 291 ntBASIC20.48■□□□□ 0.87
LDB3O75112 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LDB3O75112 AC127496.7-201ENST00000625110 1798 ntBASIC20.48■□□□□ 0.87
LDB3O75112 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
LDB3O75112 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
LDB3O75112 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDB3O75112 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
LDB3O75112 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.48■□□□□ 0.87
LDB3O75112 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDB3O75112 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
LDB3O75112 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDB3O75112 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.47■□□□□ 0.87
LDB3O75112 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LDB3O75112 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LDB3O75112 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDB3O75112 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.47■□□□□ 0.87
LDB3O75112 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.47■□□□□ 0.87
LDB3O75112 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.47■□□□□ 0.87
LDB3O75112 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDB3O75112 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDB3O75112 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.47■□□□□ 0.87
LDB3O75112 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 GUSBP5-202ENST00000510805 1989 ntBASIC20.46■□□□□ 0.87
LDB3O75112 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.46■□□□□ 0.87
LDB3O75112 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.46■□□□□ 0.87
LDB3O75112 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.46■□□□□ 0.87
LDB3O75112 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.46■□□□□ 0.87
LDB3O75112 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.46■□□□□ 0.87
LDB3O75112 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB3O75112 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LDB3O75112 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LDB3O75112 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LDB3O75112 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LDB3O75112 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
LDB3O75112 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LDB3O75112 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.45■□□□□ 0.86
LDB3O75112 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LDB3O75112 AC105265.2-201ENST00000467189 838 ntBASIC20.45■□□□□ 0.86
LDB3O75112 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.45■□□□□ 0.86
LDB3O75112 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.45■□□□□ 0.86
LDB3O75112 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.45■□□□□ 0.86
LDB3O75112 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.45■□□□□ 0.86
LDB3O75112 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
LDB3O75112 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.45■□□□□ 0.86
LDB3O75112 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LDB3O75112 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
LDB3O75112 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDB3O75112 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.44■□□□□ 0.86
LDB3O75112 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDB3O75112 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LDB3O75112 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.44■□□□□ 0.86
LDB3O75112 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDB3O75112 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDB3O75112 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDB3O75112 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LDB3O75112 OXCT2P1-201ENST00000447263 1535 ntBASIC20.43■□□□□ 0.86
LDB3O75112 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDB3O75112 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDB3O75112 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDB3O75112 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
LDB3O75112 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.43■□□□□ 0.86
LDB3O75112 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.43■□□□□ 0.86
LDB3O75112 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LDB3O75112 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.43■□□□□ 0.86
LDB3O75112 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.43■□□□□ 0.86
LDB3O75112 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.43■□□□□ 0.86
LDB3O75112 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LDB3O75112 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LDB3O75112 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDB3O75112 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.43■□□□□ 0.86
LDB3O75112 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LDB3O75112 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDB3O75112 AC139530.1-201ENST00000575312 1977 ntBASIC20.43■□□□□ 0.86
LDB3O75112 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LDB3O75112 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LDB3O75112 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB3O75112 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB3O75112 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms