Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.87■■□□□ 1.09
SHOX2O60902 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.87■■□□□ 1.09
SHOX2O60902 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHOX2O60902 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHOX2O60902 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHOX2O60902 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHOX2O60902 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHOX2O60902 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHOX2O60902 MIR7108-201ENST00000614319 87 ntBASIC21.86■■□□□ 1.09
SHOX2O60902 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHOX2O60902 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHOX2O60902 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHOX2O60902 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHOX2O60902 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHOX2O60902 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.86■■□□□ 1.09
SHOX2O60902 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SHOX2O60902 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
SHOX2O60902 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHOX2O60902 AL020996.1-203ENST00000536896 2307 ntBASIC21.85■■□□□ 1.09
SHOX2O60902 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SHOX2O60902 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
SHOX2O60902 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHOX2O60902 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SHOX2O60902 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHOX2O60902 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHOX2O60902 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.85■■□□□ 1.09
SHOX2O60902 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SHOX2O60902 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHOX2O60902 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHOX2O60902 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.84■■□□□ 1.09
SHOX2O60902 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC21.84■■□□□ 1.09
SHOX2O60902 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SHOX2O60902 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHOX2O60902 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SHOX2O60902 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHOX2O60902 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.84■■□□□ 1.09
SHOX2O60902 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.84■■□□□ 1.09
SHOX2O60902 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHOX2O60902 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHOX2O60902 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.84■■□□□ 1.09
SHOX2O60902 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.84■■□□□ 1.09
SHOX2O60902 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHOX2O60902 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHOX2O60902 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SHOX2O60902 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.83■■□□□ 1.09
SHOX2O60902 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
SHOX2O60902 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SHOX2O60902 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SHOX2O60902 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SHOX2O60902 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.83■■□□□ 1.09
SHOX2O60902 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SHOX2O60902 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
SHOX2O60902 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SHOX2O60902 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SHOX2O60902 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.82■■□□□ 1.08
SHOX2O60902 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.82■■□□□ 1.08
SHOX2O60902 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHOX2O60902 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHOX2O60902 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.82■■□□□ 1.08
SHOX2O60902 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.82■■□□□ 1.08
SHOX2O60902 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.82■■□□□ 1.08
SHOX2O60902 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SHOX2O60902 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHOX2O60902 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHOX2O60902 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHOX2O60902 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHOX2O60902 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHOX2O60902 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.82■■□□□ 1.08
SHOX2O60902 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
SHOX2O60902 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 LINC01960-201ENST00000563759 1884 ntBASIC21.81■■□□□ 1.08
SHOX2O60902 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
SHOX2O60902 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SHOX2O60902 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.81■■□□□ 1.08
SHOX2O60902 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.8■■□□□ 1.08
SHOX2O60902 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SHOX2O60902 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.8■■□□□ 1.08
SHOX2O60902 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHOX2O60902 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHOX2O60902 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHOX2O60902 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHOX2O60902 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.8■■□□□ 1.08
SHOX2O60902 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SHOX2O60902 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SHOX2O60902 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.8■■□□□ 1.08
SHOX2O60902 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.8■■□□□ 1.08
SHOX2O60902 AC092296.2-201ENST00000589470 999 ntBASIC21.8■■□□□ 1.08
SHOX2O60902 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.8■■□□□ 1.08
SHOX2O60902 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.8■■□□□ 1.08
SHOX2O60902 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms